bento-platform Goto Github PK

bento

The official Bento distribution - orchestration and deployment infrastructure for the Bento platform.

bento-platform.github.io

bento_aggregation_service

Asynchronous search result aggregation service for the Bento platform.

bento_auth_js

Helper library for Bento frontends to authenticate with an OIDC IdP and authorize requests.

bento_authorization_service

Permissions and authorization service for the Bento platform.

bento_base_images

Automated Bento platform base image building.

bento_beacon

GA4GH Beacon v2 microservice for the Bento platform

bento_build_action

GitHub CI composite action to build development and production containers for Bento components.

bento_charts

Recharts wrapper for use in Bento platform front-ends

bento_demo_dataset

Partially synthetic demo dataset for Bento.

bento_drop_box_service

Drop box and basic file management service for the Bento platform.

bento_drs

Data repository service for the Bento platform, based on GA4GH's DRS specification.

bento_event_relay

Socket.IO event relay for the Bento platform.

bento_gateway

OpenResty-based gateway, configuration, & continuous building for inclusion in Bento deployments.

bento_images

bento_keycloak_dist

Keycloak Docker image distribution for the Bento platform. This is only relevant if a Bento instance is responsible for running its own IdP.

bento_lib

Shared Python resources for Bento platform microservices.

bento_log_service

Log-fetching microservice for the Bento platform

bento_notification_service

Notification service for the Bento platform.

bento_public

A publicly accessible portal for clinical datasets, where users are able to see high-level statistics of the data available through predefined variables of interest and search the data using limited variables at a time.

bento_reference_service

Reference data (genomes & annotations) service for the Bento platform.

bento_service_registry

Microservice implementing the GA4GH Service Registry API for the Bento platform.

bento_variant_service

Variant search and GA4GH Beacon microservice for the Bento platform.

bento_web

React-based data discovery and management portal for the Bento platform.

bento_wes

Workflow execution service (based on GA4GH WES schemas) for the Bento platform.

fasta-checksum-utils

Command-line utility and async Python library for checksumming FASTA files and individual contigs.

gohan

Genomic Variants search API, working from the VCF format.

igv.js

Embeddable genomic visualization component based on the Integrative Genomics Viewer

katsu

Phenopackets/FHIR-based metadata service for the Bento platform. Docs: https://metadata-service.readthedocs.io