benbowen Goto Github PK
Name: Ben Bowen
Type: User
Company: Lawrence Berkeley National Lab
Location: Berkeley, CA
Blog: http://openmsi.nersc.gov
Ben Bowen's Projects
archbiochembiophys_2015
IPython notebooks that use the OpenMSI API.
brute_force_chemical_formula
formulagenerators
Generation of possible chemical formulae from measured mass
isotopemodels
prediction and description of isotopomer intensity distribution
metabolights_submission_tools
The Metabolights data repository supports a diverse experimental description through means of "ISA tab" files. This format is a collection of tab-delimited text files that explain a Investigation, Study, and Assay. For metabolomics researchers, this provides detailed descriptions of experimental parameters, chromatography, mass spectrometry, and metabolites detected. The challenge is making the submission of this large amount of descriptive information quick and painless. Here are the tools I use to lower the barrier to submission.
metatlas
Not the "metatlas" repo. Go to github.com/biorack/metatlas
metatlas-programmatic-access
model_time_series_data
openmsi-programmatic-access
openmsi_factorization_examples
shewymodelfitness
thoughts
Ideas and thoughts on data analysis and interpretation
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