benb Goto Github PK

alnreader

Java/Scala library for reading genomic alignment formats (MAQ/cigar)

bali-phy

Bayesian co-estimation of phylogenies and multiple alignments via MCMC

beast-mcmc

Personal copy of http://beast-mcmc.googlecode.com/svn/trunk

benb.github.com

My Pages

data2xml

A data to XML converter with a nice interface (for NodeJS).

dinky

Schemaless JSON document store backed by SQLite

evohaskell

Bio stuff in Haskell

executor

Trivially small thread pool implementation for Ruby

folly

An open-source C++ library developed and used at Facebook.

gemfury-publish

Publish private npm packages on gemfury

gsl-one-dimensional-minimization

Bindings to the GSL Brent minimizer

hazeremoval

homebrew

The missing package manager for OS X.

homebrew-bioinformatics

Homebrew scripts for bioinformatics utils

homebrew-cask

A CLI workflow for the administration of Mac applications distributed as binaries

homebrew-stats

Statistics packages for homebrew

hyde

Port of Mdo's excellent theme to Hugo

jasidepanels

Reveal side ViewControllers similar to Facebook/Path's menu

jsmetal

Distance alignment metrics in JavaScript

kindle-5.6.5-jailbreak

Kindle 5.6.5 exploitation tools.

kissxml

A replacement for Cocoa's NSXML cluster of classes. Based on libxml. Works on iOS.

latex-skeleton

My LaTeX skeleton dir for writing papers

metal

Alignment Distance Metrics

metal-js

Javascript implementation of metrics in MetAl, and MSA visualisation

metal-test

Test data for MetAl

modiphy

Flexible Scala Library for hypothesis testing using phylogenetic models

modiphy2

Trying some new ideas to improve phylogenetics calculations

node-mac-alias-resolver

NPM module for reading macOS alias files

phytree

Basic Alignment/Tree handling in Haskell

plda-objc

Objective-C wrapper for the PLDA Latent Dirichlet Allocation library