Comments (1)
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from hostile.
Related Issues (20)
- Discard partially downloaded indexes HOT 5
- Bowtie2 performance suffers when using many threads in some conditions HOT 3
- Add completion message on stderr HOT 1
- Validate scrubbed output in tests/CI HOT 1
- When 0 reads remain after decontamination, an invalid gzip file is created HOT 1
- Corrupted output if decontaminating more than one sample using Python API HOT 1
- Refactor with more OOP HOT 1
- Regarding the choice of Reference genomes HOT 3
- Allow non-default databases in cloud bucket to be downloaded on first run HOT 3
- Add versions and options to json log HOT 1
- virus masked human genome HOT 4
- Suitable for metatranscriptomics? HOT 3
- What's the best way to override the index download directory? HOT 17
- I think you can use --name (-n) on the mamba command line to override the environment name in the env file. HOT 1
- Incorporating Single-End Short Read Data Support HOT 5
- Support accepting stdin instead of a specific filepath for single ended data HOT 2
- Selection of appropriate reference genomes (indexes) HOT 4
- Allow remote index repository to be overridden
- Mode: paired short read (Bowtie2) fails when index is provided as reference fasta file HOT 1
- Automatically generate and cache minimap2 indexes to eliminate redundant indexing overhead
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from hostile.