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Brian Thomas's Projects

aligngraph icon aligngraph

Algorithm for secondary de novo genome assembly guided by closely related references

arduino-makefile icon arduino-makefile

Makefile for Arduino sketches. It defines the workflows for compiling code, flashing it to Arduino and even communicating through Serial.

bam2graph icon bam2graph

figure out paired end links between contigs

celery icon celery

Distributed Task Queue (development branch)

clusterfck icon clusterfck

[UNMAINTAINED] K-means and hierarchical clustering

diamond icon diamond

Accelerated BLAST compatible local sequence aligner.

focus icon focus

A model to identify organisms present in metagenomes in seconds

kdtree-c icon kdtree-c

A simple C library for working with KD-Trees

preferences icon preferences

Adds support for easily creating custom preferences for models

pullseq icon pullseq

Utility program for extracting sequences from a fasta/fastq file

pynubio icon pynubio

Python library for simple bioinformatics tasks, based off nubio ruby

rapidjson icon rapidjson

A fast JSON parser/generator for C++ with both SAX/DOM style API

riparian icon riparian

System for executing tasks with delayed job

shrinksam icon shrinksam

C++ program to shrink the SAM file after a read-mapping

sickle icon sickle

Windowed Adaptive Trimming for fastq files using quality

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