Comments (2)
EricChen424
commented on September 28, 2024
Topic for discussion: The ABySS assembly seems to spit out a lot of 1 base gaps. The datasets I'm using are "randomly" cherrypicked to be longer than 1. Think about filtering
from gappredict.
EricChen424
commented on September 28, 2024
https://github.com/bcgsc/Sealer_NN/tree/master/src/app/new_rnn/out/predict_results/toy_example
https://github.com/bcgsc/Sealer_NN/tree/master/src/app/new_rnn/out/training_metrics/BS_128_ED_128_LD_64_E_1000_R_0
from gappredict.
Related Issues (20)
- Do an experiment with + without read errors HOT 1
- Hyperparameter Sweep
- Model is taking a long time to train when multiple jobs ran in parallel
- Start gap prediction a few bases upstream of the flank end
- Make boxplots with bigger font
- User friendly box plots
- Thicker box plot lines
- Implement Python scripts to get 100 gaps randomly
- integrate beam search results into the probabilities plot
- Thicker Lines
- Final Metric
- Interpretation of results
- Take the Top 1 Beam Search as well
- fyi HOT 1
- Parsing Exonerate Output HOT 2
- TODO
- Definition of Percent Coverage
- Figure Improvements
- fix links HOT 1
- installation error gapPredict-1.0.1 HOT 2
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from gappredict.