awitney Goto Github PK

190531-sql

2017

Materials used during #NGSchool2017

2017-06-13-sgul-scipro

2017-06-13-sgul-scipro-linux

2017-06-13-sgul-scipro-python

2017-06-13-sgul-scipro-r

awitney.github.io

bdib_2021_dna_seq_motifs

bioperl-live

Core BioPerl 1.x code

bioperl-run

BioPerl wrappers

docker-images

dotfiles

hamronization

Parse multiple Antimicrobial Resistance Analysis Reports into a common data structure

hamronization_workflow

Harmonization of AMR predictor tool outputs

kasel

microbedb

Provides a local database of in-house and published genomes for Bacteria and Archaea from NCBI

mtbseq_source

MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumina whole genome sequence data of Mycobacterium tuberculosis complex isolates.

ngs-bioinformatics-workshop_sgul_31-01-2020

Repository of the NGS Bioinformatics workshop at St George's University of London

pathogen-informatics-training

poretools

a toolkit for working with Oxford nanopore data

pyjar

A python implementation of the joint ancestral state reconstruction algorithm of Pupko et al

r_for_beginners_2022_04_29

reticulatus

A snakemake-based pipeline for assembling and polishing long genomes from long nanopore reads

ukrse.github.io

Website for the UK Society of Research Software Engineers