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assembly-seek

De novo Long-read Genome Assembly Pipeline

cancerrna_clustering

I use unsupervised learning methods (PCA, Hierarchical Clustering, and K-means Clustering) to subgroup 801 cancer samples into one of 5 clusters based on their gene expression profiles, 20, 531 gene expression measurements.

costly_conversion

ervx

Endogenous Retrovirus Expression Pipeline for Human and Mouse

eventsdatabase

PostgreSQL Database

insight_project

mapreduce

methyl-seek

bisulphite sequencing based methylation pipeline

nyc_parking_violations

Docker image for accessing OPCV API , pushing data to Elasticsearch, and visualizing data with Kibana via docker-compose.

open-sauced

🍕 This is a project to identify your next open source contribution.

pipeliner

An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.

qda-algorithm-

Data was simulated and Quadratic Discriminant Algorithm was written from ground up .

qsar_classification

Unregularized logistic regression, logistic with lasso, logistic with ridge, radial SVM, and random forests are used here to classify each of 1,055 molecules as biodegradable or not biodegradable based on its 41 features.

spark_for_yelpdata_analysis

Using PySpark on AWS EMR to analyze Yelp reviews.

streaming_data_viaawskinesis

variantannotationtool

Extracting information from VCF file for 6,977 variants.