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2015-03-17_unix_r

Course content for the Cambridge NGS analysis course 17th March morning session

academic-writing-check

check for passive words, weasel words, duplicate words, typographical errors and words strunk & white don't like

anvil

Artificial neural Networks for VIral Lineages

asmmhossain.github.io

Mukarram's Github site

comet-paper-scripts

dataviz

A book covering the fundamentals of data visualization.

demodel

Pipeline for selecting/rejecting demographic model on molecular data

ebola2014-practical

Worked example of exploratory phylodynamics of early EBOV epidemic in Sierra Leone

epicookbook

A cookbook of epidemiological models in R

exploratory-phylodynamics

Exploratory phylodynamics

hello-world

hivdynamics16

influenza-dynamics-practical-h5n1

Inferring spatiotemporal dynamics of H5N1 influenza from sequence data

labs

Rmd source files for the HarvardX series PH525x

lvz17

Presentation for LVZ Retreat, 2017

lvzmarch16

Presentation slides for LVZ talk in March

lvzretreat16

Presentation for LVZ Retreat, 2016

manchester_papers

Test repo for pull requests

mepi17

mevr

Molecular Epidemiology of Viruses in R

microbial_genomics_tutorials

In this repo you will find demos and tutorials prepared by members of the CBIB. Feel free to use them for non-commercial activities given that you give proper credit. Have fun!

pangea2015

Results from PANGEA round 2

phlow

A phylodynamics workflow for pathogen sequence data

phyg

This repository contains files for the phylogenetic workflow developed for Galaxy

pipelign

pore

Binder repository for Nanopore data

port19

Presentation for Portsmouth University

pycomet

Python implementation of the COMET subtyping tool

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

python-intro

Materials for the "Introduction to Solving Biological Problems with Python" course