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awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

cancerapp

Web portal for browsing predicted gene interactions defined by EnGIne (Encyclopedia of Genetic Interactions)

encyclopediageneticinteractions

hierarchicalsinglecell

An R package to robustly identify subpopulations in single-cell RNASeq data.

magen

magenbio

magensinglecell

martin_et_al_cell_2019

Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"

nature-med-2023

notebook_whisperer

An LLM-based coding assistant to help with the construction of Jupyter notebooks

robustsinglecell

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

sc-usersgroup

Info about NIH-IRP Single Cell Users Group events

seq

spagefinder

Computational approach to identify Survival associated Pairwise Gene Expression states.

spageportal

starter-hugo-academic

visium-clustergrammer2