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amplicon-biostatistics

alpha diversity, beta diversity, and other biostatistics for amplicon data

amplicon-metagenome-metadata-preprocessing

Cleans up and converts continuous metadata into categorical metadata for more meaningful correlation analyses and beta diversity visualizations. Outputs include cleaned continuous and categorical metadata tables

bash_zshell

bash/zshell scripts for random bioinformatics needs

built-iab

Repository for An Introduction to Applied Bioinformatics built notebooks.

fayetteville-green-lake-sediment-trap-amplicon-processing

UNIX and qiime2 pipeline to process 250 bp x 2 paired end reads

fluorescence-in-situ-hybridization-probe-analyses

Determines the specificity and coverage of fluorescence in situ hybridization probes with competitor probes accounted for (if applicable). Designed to analyze Asgard Archaea probes but may be used for any targets

image_analysis

metagenome-only

network_analysis

networkanalysis

statistics_other

time_series

topic-functional-annotation

A repository for the lessons and notebooks used for Binder tutorials