arundurvasula Goto Github PK
Name: Arun Durvasula
Type: User
Company: USC
Bio: Genomes and Evolution
Arun Durvasula's Projects
angsbigd
angsd reanalysis of maize HM3 data
angsd-wrapper
A project for extending ANGSD
angsd-wrapper-paper
Manuscript!
archie2
better
arundurvasula.github.io
assembler-compare-old
A script to compare assemblers using metrics from the Assemblathon papers
assembler_compare
at-scripts
Helper scripts for dealing with various file conversions etc.
aw-mer
coverage-depth-assembly
Experiement looking at how widely different coverage affects viral assemblies
cv
Curriculum Vitae
dom_bot
Parameterize the maize domestication bottleneck
domestication_sims
A simulation pipeline for maize domestication
dominance
fps-cluster-guide
A guide to using the Farm cluster for Foundation Plant Services
fps-repository
A place for hopefully well documented scripts related to assembly, blast, and others
frydomics
A journal club for -omicsy things @ UCLA
fwdpp
fwdpp is a C++ template library for implementing efficient forward-time population genetic simulations
gal_bal
gdb-sim
A shiny application that simulates plant disease spread on a 25x25 grid
grfp
Here are a set of example Relevant Background and Future Goals and Graduate Research Plan Statement statements for the NSF GRFP in Ecology and Evolutionary Biology.
gwas_rmd
haplotype_freq_filter
libsequence
libsequence: a C++ class library for evolutionary genetic analysis
logthat
A program that remembers what you did to your data so you don't have to
maize-background-selection-simulations
A pipeline for both forward and coalescent simulations of background selection during maize domestication on Slurm
migration
missense
net_charge
Calculates the net charge of a polypeptide at a given pH.
reovirus-ngs-analysis
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