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agat

Another Gtf/Gff Analysis Toolkit

augustus

Genome annotation with AUGUSTUS

augustus_parallel

Run AUGUSTUS gene prediction in parallel

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

awesome-single-cell

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

barnswallow

bds-files

Supplementary files for my book, "Bioinformatics Data Skills"

biocode

Bioinformatics code libraries and scripts

book

bookdown

Authoring Books and Technical Documents with R Markdown

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

circompara

:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data

climate_vizualization

common_analyses

Repository of common bioinformatics scripts

compgen2021

datasciencecoursera

datasharing

The Leek group guide to data sharing

edta

Extensive de-novo TE Annotator

emo

Easily insert emoji into R and RMarkdown

exercises

genome-annotation

A nextflow pipeline with automatic software provisioning to generate hints and subsequent genome model predictions with AUGUSTUS

git_exercises

This is dummy repo

go_enrichment

Transcripts annotation and GO enrichment Fisher tests

helixer

Using Deep Learning to predict gene annotations

perlscripts_jit

All the misc. perl scripts

programmingassignment2

Repository for Programming Assignment 2 for R Programming on Coursera

rmd4sci

Rmarkdown for Scientists

training-material

A collection of Galaxy-related training material