Comments (4)
thanks Jorge! just another minor point to @Lioscro , in order to use adata.obs.index.str.split('-').str[-1].astype(int)
the pandas version seems need to be a certain version, 1.2.2
or above works for me. you may specify the version for pandas in your requirement.txt file
from dynast-release.
Hi, @jmartinrufino,
I've just pushed an update that I believe should fix the issue. Could you try again and let me know if it works now?
(for the sake of testing, you may want to truncate your csv so that only a subset of cells are used)
from dynast-release.
Thanks both for the prompt response! It is working perfectly now with the latest fix. Thanks!!
from dynast-release.
This issue is stale because it has been open 30 days with no activity. Remove stale label or comment or this will be closed in 5 days
from dynast-release.
Related Issues (13)
- Motivation for using consensus HOT 3
- Consensus.bam lost gene-tag after completion HOT 2
- Recruiting Python Programmers to Develop Predictive Single Cell Spatiotemporal Analysis Toolkit HOT 1
- dynast count error:forward_strand = df_counts['GX'].map(lambda gx: gene_infos[gx]['strand']) == '-' KeyError: '-'
- dynast --list option not suitable HOT 1
- dynast estimate: behavior for genes for which estimation is skipped and --reads argument HOT 3
- dynast count --conversion
- dynast count very slow - may not be parallelized?
- Align: not enough memory for BAM sorting potentially due to BinsN too high HOT 5
- Dynast count BamError: Some paired reads do not have mates HOT 3
- Dynast count error: HOT 7
- Bug in 'estimate' when p_e is taken from control HOT 4
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from dynast-release.