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bebi103

Utilities for BE/Bi 103

bezier-curved-edges-networkx

Function to produce Bezier curves for the edges in a NetworkX graph

biocircuits

Utilities for Caltech course BE 150

celluloid

:movie_camera: Matplotlib animations made easy

cookiecutter-data-science

A logical, reasonably standardized, but flexible project structure for doing and sharing data science work.

covid-19-rna-seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

csp4ml

repo for modeling and analyzing metabolic labeling data

dnafeaturesviewer

:eye: Python library to plot DNA sequence features (e.g. from Genbank files)

dynamo-notebooks

Tutorials of Dynamo usage cases and code to reproduce the manuscript

dynamo-release

Inclusive model of expression dynamics with conventional or metabolic labeling based scRNA-seq / multiomics, vector field reconstruction and differential geometry analyses

dynamo-tutorials

Tutorials on using latest dynamo package

dynamo_readthedocs

deposit tutorials for dynamo readthedocs pages

dynamo_submission

notebooks for generating figures for submitting dynamo

dynast-release

Inclusive and efficient quantification of labeling and splicing RNAs for time-resolved metabolic labeling based scRNA-seq experiments

easyplot

Easy Plot - A thin matplotlib wrapper for generating fast, easy and reusable plots in Python

estream2

2D evenly spaced streamlines

evenly_spaced_streamlines

Plot evenly-spaced streamlines in MATLAB with Jobard & Lefer 1997 algorithm

glmgampoi

Fit Gamma-Poisson Generalized Linear Models Reliably

logging

Repository for dynamo style's logging functionalities

matplotlib_for_papers

Handout for the tutorial "Creating publication-quality figures with matplotlib"

mpltex

A python package for producing publication quality images using matplotlib.

pisa

A collection of tools to process single-cell omics datasets.

public-apis

A collective list of free APIs for use in software and web development.

pygenometracks

python module to plot beautiful and highly customizable genome browser tracks

python-project-blueprint

Blueprint/Boilerplate For Python Projects

qiu_lab_website

The source code for the Qiu lab website (based on ato-neulab)

rastervis

The raster package defines classes and methods for spatial raster data access and manipulation. The rasterVis package complements raster providing a set of methods for enhanced visualization and interaction.

scg_lib_structs

Collections of library structure and sequence of popular single cell genomic methods

scitools

Additional scientific computing functionality in Python - extensions to NumPy/SciPy++