argriffing Goto Github PK
Type: User
argriffing's Projects
accelem
expectation maximization acceleration
adiaqc
Adiabatic quantum computation solver used to solve various problems (machine learning problems included).
algopy
AlgoPy is a Research Prototype for Algorithmic Differentation in Python
arb
C library for arbitrary-precision floating-point ball arithmetic
arbtkf91
arbitrary precision tkf91 alignment
argriffing.github.io
something about github pages
asv
Airspeed Velocity: A simple Python benchmarking tool with web-based reporting
bali-phy
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
beast2
Bayesian Evolutionary Analysis by Sampling Trees
bigkmeans
An implementation of Lloyd's kmeans clustering algorithm for data sets that contain many points.
bintools
Simple utilities to manipulate binary data streams.
biofuck
Biofuck project provides an integrated environment in bioinformatics for the Brainfuck language.
blog
for code created as part of http://studywolf.wordpress.com
cmedb
vaporware computational molecular evolution command line suite using small sqlite databases for input and output
ctmcaas
continuous time markov chains as a service
ctmczoo
a few continuous-time finite-state Markov chains and their properties
cvxpy
A Python-embedded modeling language for convex optimization problems.
dendropy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
dgrp-unofficial
misc notes
dipy
Diffusion MR Imaging in Python
drawtree
A project to visualize phylogenetic trees and related objects.
drosophiline
Let's analyze some data.
eigensoft
principal components population genetics analysis on linux
em-dec-2013
maximum likelihood estimation for a model with missing data
ete
ETE is a python programming toolkit that assists in the automated manipulation, analysis and visualization of any type of hierarchical trees. This includes phylogenetic trees, clustering results and profile-based trees. It supports node annotation, programatic tree drawing, circular visualization, SVG, PNG and PDF image rendering, and more!
fels-reml-jan-2014
Math related to branch length estimation for Brownian motion continuous character evolution on unrooted phylogenies.
fiedlerology
linear-complexity algorithms for linear algebra with matrices related to tree graphs
flint2
FLINT (Fast Library for Number Theory)
fungus-pca
scripts to support analysis of some fungus data
fwdsimhack1209
a particularly inflexible population genetic forward simulator
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