areebapatel Goto Github PK
Name: Areeba Patel
Type: User
Company: DKFZ
Location: Heidelberg
Name: Areeba Patel
Type: User
Company: DKFZ
Location: Heidelberg
Alignment, quantification and fusion prediction from long RNA reads
chimeraviz is an R package that automates the creation of chimeric RNA visualizations.
Data-efficient and weakly supervised computational pathology on whole slide images - Nature Biomedical Engineering
Haplotype VCF comparison tools
Machine learning Jupyter notebooks, tutorials, and code
fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing
Preprocessing methylation pipeline, written in python. Easy to use and highly parallelized.
Rapid comprehensive adaptive nanopore-sequencing of CNS tumours set-up and analysis pipeline
Neuropathology Heidelberg Rapid-CNS2 pipeline (bash + docker)
Read Until scripts
Single Cell Long Read is a suite of tools dedicated to Cell barcode / UMI assignment and analysis of highly multiplexed single cell Nanopore long read sequencing data.
smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very low allele fraction variants using targeted DNA sequencing and a novel molecular barcode-aware variant caller", BMC Genomics, 2017 18:5. https://bmcgenomics.biomedcentral.com/articles/10.1186/s12864-016-3425-4
Data and code supporting smCounter-v2-paper
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.