Using gff file with merfin ? about merfin

[arangrhie]

Hello @aureliendejode , I think there should be a way to convert your arrow's .gff to .vcf.
Let me take a look at this. Feel free to share your .gff (or part of it) if you have it handy.

Thanks!
Arang

[aureliendejode]

Hello,

Here is a part of the .gff file. Thanks for your help.

##gff-version 3
##pacbio-variant-version 2.1
##date Fri Jul 16 16:48:15 2021
##feature-ontology http://song.cvs.sourceforge.net/*checkout*/song/ontology/sofa.obo?revision=1.12
##source GenomicConsensus 2.3.3
##source-commandline /sw/bioinfo/SMRT/7.0.1/rackham/install/smrtlink-release_7.0.1.66975/bundles/smrttools/install/smrttools-release_7.0.1.66768/private/pacbio/pythonpkgs/GenomicC
onsensus/binwrap/../../../../../private/pacbio/pythonpkgs/GenomicConsensus/bin/variantCaller --skipUnrecognizedContigs -x 5 -q 20 -X120 -v -j 20 --algorithm=arrow -r /proj/snic202
0-6-155/canu_new_pacbio_all_third_lib-6-155/purge_dup/canu_purged.fa -o saxa.canu.10.gff -o saxa.canu.10.fastq -o saxa.canu.10.fasta saxa.canu.chunk9.xml
##source-alignment-file /crex/proj/snic2020-6-155/canu_new_pacbio_all_third_lib-6-155/arrow_grid_on_grid/My_installation/saxa.canu.chunk9.xml
##source-reference-file /proj/snic2020-6-155/canu_new_pacbio_all_third_lib-6-155/purge_dup/canu_purged.fa
##sequence-region tig00000029_1 1 230969
##sequence-region tig00000115_1 1 45686
##sequence-region tig00000314_1 1 81703
##sequence-region tig00000498_1 1 136528
##sequence-region tig00000519_1 1 340669
##sequence-region tig00000648_1 1 40113
##sequence-region tig00000730_1 1 21348
##sequence-region tig00000738_1 1 62808
##sequence-region tig00000887_1 1 27055
##sequence-region tig00000978_1 1 46578
##sequence-region tig00001002_1 1 614600
##sequence-region tig00001077_1 1 17340
##sequence-region tig00001225_1 1 1069669
##sequence-region tig00001226_1 1 20953
##sequence-region tig00001253_1 1 1034542
##sequence-region tig00001260_1 1 181109
##sequence-region tig00001401_1 1 426245
##sequence-region tig00001441_1 1 32440
##sequence-region tig00001512_1 1 89992
##sequence-region tig00001518_1 1 147752
##sequence-region tig00001544_1 1 55688
##sequence-region tig00001681_1 1 704045
##sequence-region tig00001696_1 1 332314
##sequence-region tig00001707_1 1 150133
##sequence-region tig00001718_1 1 172648
##sequence-region tig00001803_1 1 117846
##sequence-region tig00001887_1 1 32646
##sequence-region tig00001980_1 1 315052
##sequence-region tig00002030_1 1 25448
##sequence-region tig00002092_1 1 25195
##sequence-region tig00002158_1 1 194868
##sequence-region tig00002381_1 1 213497
##sequence-region tig00002406_1 1 153612
##sequence-region tig00002418_1 1 652135
##sequence-region tig00002548_1 1 786247
##sequence-region tig00002567_1 1 22785
##sequence-region tig00002584_1 1 193090
##sequence-region tig00002597_1 1 197532
##sequence-region tig00002672_1 1 109982
##sequence-region tig00002723_1 1 16204
##sequence-region tig00002724_1 1 267270
##sequence-region tig00002728_1 1 49383
##sequence-region tig00002811_1 1 28416
##sequence-region tig00002909_1 1 44198
##sequence-region tig00002918_1 1 236686
##sequence-region tig00002938_1 1 743972
##sequence-region tig00003000_1 1 56704
##sequence-region tig00003080_1 1 407104
##sequence-region tig00003092_1 1 578060
##sequence-region tig00003141_1 1 95879
##sequence-region tig00003187_1 1 21363
##sequence-region tig00003330_1 1 202709
##sequence-region tig00003441_1 1 653414
##sequence-region tig00003510_1 1 11881
##sequence-region tig00003633_1 1 15282
##sequence-region tig00003729_1 1 461566
##sequence-region tig00003799_1 1 536649
##sequence-region tig00003801_1 1 590742
##sequence-region tig00003827_1 1 40494
##sequence-region tig00003928_1 1 498936
##sequence-region tig00003931_1 1 174979
##sequence-region tig00004008_1 1 93467
##sequence-region tig00004082_1 1 261025
##sequence-region tig00004239_1 1 352145
##sequence-region tig00004245_1 1 148900
##sequence-region tig00004257_1 1 433760
##sequence-region tig00004353_1 1 291863
##sequence-region tig00004364_1 1 41300
##sequence-region tig00004374_1 1 303891
##sequence-region tig00004391_1 1 70109
##sequence-region tig00004417_1 1 65618
##sequence-region tig00004429_1 1 189356
##sequence-region tig00004520_1 1 27650
##sequence-region tig00004618_1 1 477856
##sequence-region tig00004631_1 1 284306
##sequence-region tig00004738_1 1 101924
##sequence-region tig00004810_1 1 422641
##sequence-region tig00004851_1 1 454457
##sequence-region tig00004856_1 1 176488
##sequence-region tig00004937_1 1 269658
##sequence-region tig00004981_1 1 30678
##sequence-region tig00005013_1 1 150888
##sequence-region tig00005016_1 1 197932
##sequence-region tig00005067_1 1 210553
##sequence-region tig00005224_1 1 354846
##sequence-region tig00005244_1 1 56432
##sequence-region tig00005341_1 1 71878
##sequence-region tig00005386_1 1 91632
##sequence-region tig00005565_1 1 326564
##sequence-region tig00005568_1 1 289485
##sequence-region tig00005587_1 1 79853
##sequence-region tig00005681_1 1 82956
##sequence-region tig00005701_1 1 162688
##sequence-region tig00005716_1 1 20604
##sequence-region tig00005726_1 1 35366
##sequence-region tig00005735_1 1 97568
##sequence-region tig00005776_1 1 21165
##sequence-region tig00005790_1 1 328671
##sequence-region tig00005875_1 1 7260
##sequence-region tig00005893_1 1 22261
##sequence-region tig00005896_1 1 241946
##sequence-region tig00005941_1 1 104305
##sequence-region tig00005987_1 1 21046
##sequence-region tig00006040_1 1 16776
##sequence-region tig00006052_1 1 108211
##sequence-region tig00006071_1 1 100616
##sequence-region tig00006156_1 1 223245
##sequence-region tig00006216_1 1 24025
##sequence-region tig00006416_1 1 280153
##sequence-region tig00006512_1 1 71216
##sequence-region tig00006518_1 1 125291
##sequence-region tig00006553_1 1 60661
##sequence-region tig00006604_1 1 85631
##sequence-region tig00006628_1 1 65802
##sequence-region tig00006668_1 1 345671
##sequence-region tig00006687_1 1 308076
##sequence-region tig00006697_1 1 242861
##sequence-region tig00006804_1 1 199681
##sequence-region tig00006901_1 1 249597
##sequence-region tig00006913_1 1 225134
##sequence-region tig00006941_1 1 297892
##sequence-region tig00007064_1 1 131294
##sequence-region tig00007069_1 1 272954
##sequence-region tig00007105_1 1 251211
##sequence-region tig00007173_1 1 73456
##sequence-region tig00007178_1 1 48445
##sequence-region tig00007290_1 1 21719
##sequence-region tig00007312_1 1 247559
##sequence-region tig00007343_1 1 276254
##sequence-region tig00007367_1 1 48679
##sequence-region tig00007401_1 1 213083
##sequence-region tig00007459_1 1 24502
##sequence-region tig00007477_1 1 31656
##sequence-region tig00007510_1 1 97545
##sequence-region tig00007531_1 1 210197
##sequence-region tig00007560_1 1 15422
##sequence-region tig00007703_1 1 114510
##sequence-region tig00007764_1 1 300329
##sequence-region tig00007807_1 1 15714
##sequence-region tig00007829_1 1 79967
##sequence-region tig00007837_1 1 77323
##sequence-region tig00007913_1 1 179271
##sequence-region tig00007922_1 1 277115
##sequence-region tig00007934_1 1 236027
##sequence-region tig00007979_1 1 134846
##sequence-region tig00007982_1 1 29730
##sequence-region tig00008016_1 1 201764
##sequence-region tig00008038_1 1 155227
##sequence-region tig00008082_1 1 258559
##sequence-region tig00008099_1 1 96255
##sequence-region tig00008117_1 1 48321
##sequence-region tig00008132_1 1 151786
##sequence-region tig00008144_1 1 36322
##sequence-region tig00008177_1 1 139440
##sequence-region tig00008203_1 1 36157
##sequence-region tig00008218_1 1 246842
##sequence-region tig00008261_1 1 29496
##sequence-region tig00008410_1 1 86017
##sequence-region tig00008449_1 1 29077
##sequence-region tig00008462_1 1 31304
##sequence-region tig00008509_1 1 102313
##sequence-region tig00008554_1 1 20059
##sequence-region tig00008594_1 1 161187
##sequence-region tig00008599_1 1 163291
##sequence-region tig00008613_1 1 22564
##sequence-region tig00008626_1 1 217193
##sequence-region tig00008685_1 1 206183
##sequence-region tig00008787_1 1 37445
##sequence-region tig00008790_1 1 82357
##sequence-region tig00008817_1 1 17108
##sequence-region tig00008864_1 1 57454
##sequence-region tig00008933_1 1 145529
##sequence-region tig00008954_1 1 29194
##sequence-region tig00009035_1 1 134432
##sequence-region tig00009137_1 1 27282
##sequence-region tig00009146_1 1 50657
##sequence-region tig00009186_1 1 47884
##sequence-region tig00009199_1 1 69650
##sequence-region tig00009238_1 1 194100
##sequence-region tig00009252_1 1 167225
##sequence-region tig00009282_1 1 170718
##sequence-region tig00009325_1 1 22980
##sequence-region tig00009386_1 1 17361
##sequence-region tig00009398_1 1 185273
##sequence-region tig00009405_1 1 19385
##sequence-region tig00009418_1 1 54647
##sequence-region tig00009420_1 1 114256
##sequence-region tig00009452_1 1 137830
##sequence-region tig00009520_1 1 152987
##sequence-region tig00009532_1 1 9925
##sequence-region tig00009549_1 1 86218
##sequence-region tig00009563_1 1 7596
##sequence-region tig00009586_1 1 42703
##sequence-region tig00009602_1 1 72111
##sequence-region tig00009603_1 1 60703
##sequence-region tig00009631_1 1 127575
##sequence-region tig00009664_1 1 98675
##sequence-region tig00009672_1 1 37680
##sequence-region tig00009676_1 1 76927
##sequence-region tig00009713_1 1 22739
##sequence-region tig00009731_1 1 24407
##sequence-region tig00009779_1 1 170227
##sequence-region tig00009792_1 1 39626
##sequence-region tig00009797_1 1 126008
##sequence-region tig00009814_1 1 17800
##sequence-region tig00009823_1 1 179950
##sequence-region tig00009914_1 1 21886
##sequence-region tig00010007_1 1 41847
##sequence-region tig00010014_1 1 106586
##sequence-region tig00010024_1 1 160507
##sequence-region tig00010057_1 1 133900
##sequence-region tig00010117_1 1 18556
##sequence-region tig00010151_1 1 59540
##sequence-region tig00010184_1 1 124717
##sequence-region tig00010202_1 1 117718
##sequence-region tig00010257_1 1 49708
##sequence-region tig00010261_1 1 31357
##sequence-region tig00010406_1 1 165103
##sequence-region tig00010427_1 1 174536
##sequence-region tig00010489_1 1 169658
##sequence-region tig00010497_1 1 91060
##sequence-region tig00010547_1 1 88441
##sequence-region tig00010589_1 1 105153
##sequence-region tig00010644_1 1 15231
##sequence-region tig00010682_1 1 113214
##sequence-region tig00010709_1 1 30089
##sequence-region tig00010718_1 1 139762
##sequence-region tig00010762_1 1 45452
##sequence-region tig00010804_1 1 42957
##sequence-region tig00010826_1 1 87047
##sequence-region tig00010829_1 1 62439
##sequence-region tig00010878_1 1 123882
##sequence-region tig00010949_1 1 39082
##sequence-region tig00011006_1 1 145110
##sequence-region tig00011043_1 1 23346
##sequence-region tig00011092_1 1 18818
##sequence-region tig00011179_1 1 35596
##sequence-region tig00011254_1 1 94684
##sequence-region tig00011331_1 1 83855
##sequence-region tig00011337_1 1 143281
##sequence-region tig00011449_1 1 129688
##sequence-region tig00011454_1 1 25993
##sequence-region tig00011460_1 1 16085
##sequence-region tig00011473_1 1 75733
##sequence-region tig00011489_1 1 61696
##sequence-region tig00011544_1 1 68502
##sequence-region tig00011553_1 1 53449
##sequence-region tig00011700_1 1 131294
##sequence-region tig00011712_1 1 108679
##sequence-region tig00011740_1 1 23147
##sequence-region tig00011799_1 1 32808
##sequence-region tig00011857_1 1 78566
##sequence-region tig00011873_1 1 35865
##sequence-region tig00011874_1 1 59059
##sequence-region tig00011909_1 1 55160
##sequence-region tig00011937_1 1 70427
##sequence-region tig00011952_1 1 54366
##sequence-region tig00012073_1 1 106265
##sequence-region tig00012128_1 1 76245
##sequence-region tig00012274_1 1 66512
##sequence-region tig00012286_1 1 29549
##sequence-region tig00012505_1 1 45837
##sequence-region tig00012537_1 1 30980
##sequence-region tig00012548_1 1 52179
##sequence-region tig00012557_1 1 16526
##sequence-region tig00012563_1 1 94655
##sequence-region tig00012687_1 1 37918
##sequence-region tig00012766_1 1 18884
##sequence-region tig00012789_1 1 3518
##sequence-region tig00012803_1 1 27778
##sequence-region tig00012811_1 1 24657
##sequence-region tig00012823_1 1 51388
##sequence-region tig00012828_1 1 15359
##sequence-region tig00012861_1 1 88032
##sequence-region tig00012863_1 1 38477
##sequence-region tig00012891_1 1 29345
##sequence-region tig00012919_1 1 32155
##sequence-region tig00012927_1 1 60064
##sequence-region tig00012940_1 1 61397
##sequence-region tig00012942_1 1 74723
##sequence-region tig00013000_1 1 19092
##sequence-region tig00013014_1 1 27720
##sequence-region tig00013092_1 1 84732
##sequence-region tig00013100_1 1 41854
##sequence-region tig00013104_1 1 74859
##sequence-region tig00013159_1 1 35270
##sequence-region tig00013173_1 1 15588
##sequence-region tig00013215_1 1 46448
##sequence-region tig00013234_1 1 26626
##sequence-region tig00013235_1 1 51544
##sequence-region tig00013262_1 1 17878
##sequence-region tig00013266_1 1 17432
##sequence-region tig00013278_1 1 36588
##sequence-region tig00013381_1 1 55564
##sequence-region tig00013389_1 1 47468
##sequence-region tig00013408_1 1 33014
##sequence-region tig00013486_1 1 32384
##sequence-region tig00013553_1 1 47097
##sequence-region tig00013569_1 1 13769
##sequence-region tig00013574_1 1 104240
##sequence-region tig00013638_1 1 22499
##sequence-region tig00013706_1 1 34988
##sequence-region tig00013756_1 1 37978
##sequence-region tig00013797_1 1 78540
##sequence-region tig00013830_1 1 23399
##sequence-region tig00013843_1 1 32116
##sequence-region tig00013889_1 1 51805
##sequence-region tig00013929_1 1 25657
##sequence-region tig00013948_1 1 34159
##sequence-region tig00013979_1 1 45238
##sequence-region tig00014002_1 1 42409
##sequence-region tig00014009_1 1 52664
##sequence-region tig00014027_1 1 61190
##sequence-region tig00014083_1 1 50474
##sequence-region tig00014086_1 1 41324
##sequence-region tig00014123_1 1 21511
##sequence-region tig00014127_1 1 20257
##sequence-region tig00014233_1 1 23592
##sequence-region tig00014274_1 1 42319
##sequence-region tig00014299_1 1 20719
##sequence-region tig00014315_1 1 37257
##sequence-region tig00014414_1 1 47696
##sequence-region tig00014438_1 1 36715
##sequence-region tig00014439_1 1 44928
##sequence-region tig00014455_1 1 43014
##sequence-region tig00014470_1 1 53912
##sequence-region tig00014529_1 1 14737
##sequence-region tig00014548_1 1 22623
##sequence-region tig00014677_1 1 68084
##sequence-region tig00014775_1 1 47012
##sequence-region tig00014816_1 1 36938
##sequence-region tig00014841_1 1 25774
##sequence-region tig00014848_1 1 39947
##sequence-region tig00014861_1 1 19880
##sequence-region tig00014862_1 1 50794
##sequence-region tig00014877_1 1 58623
##sequence-region tig00014888_1 1 29018
##sequence-region tig00014989_1 1 16677
##sequence-region tig00015020_1 1 15949
##sequence-region tig00015074_1 1 26135
##sequence-region tig00015096_1 1 53702
##sequence-region tig00015149_1 1 30957
##sequence-region tig00015179_1 1 25010
##sequence-region tig00015221_1 1 33735
##sequence-region tig00015236_1 1 18147
##sequence-region tig00015247_1 1 13169
##sequence-region tig00015259_1 1 33881
##sequence-region tig00015264_1 1 34692
##sequence-region tig00015289_1 1 28654
##sequence-region tig00015291_1 1 16261
##sequence-region tig00015292_1 1 17520
##sequence-region tig00015327_1 1 21921
##sequence-region tig00015336_1 1 12331
##sequence-region tig00015372_1 1 13674
##sequence-region tig00015408_1 1 52619
##sequence-region tig00015516_1 1 22352
##sequence-region tig00015567_1 1 26320
##sequence-region tig00015695_1 1 17059
##sequence-region tig00015701_1 1 35076
##sequence-region tig00015737_1 1 19197
##sequence-region tig00015771_1 1 33159
##sequence-region tig00015820_1 1 13513
##sequence-region tig00015893_1 1 14830
##sequence-region tig00015917_1 1 16549
##sequence-region tig00015944_1 1 19862
##sequence-region tig00015961_1 1 10454
##sequence-region tig00015972_1 1 21989
##sequence-region tig00016004_1 1 17677
##sequence-region tig00016140_1 1 4169
##sequence-region tig00016184_1 1 19470
##sequence-region tig00016287_1 1 21551
##sequence-region tig00016296_1 1 18131
##sequence-region tig00016308_1 1 10780
##sequence-region tig00016330_1 1 26903
##sequence-region tig00016331_1 1 17645
##sequence-region tig00016343_1 1 24748
##sequence-region tig00016387_1 1 6379
##sequence-region tig00016405_1 1 25586
##sequence-region tig00016424_1 1 16172
##sequence-region tig00016426_1 1 16126
##sequence-region tig00016691_1 1 34369
##sequence-region tig00016703_1 1 14543
##sequence-region tig00016733_1 1 29866
##sequence-region tig00016748_1 1 23647
##sequence-region tig00016834_1 1 63428
##sequence-region tig00016842_1 1 1353
##sequence-region tig00016855_1 1 8407
##sequence-region tig00016870_1 1 24660
##sequence-region tig00016888_1 1 57106
##sequence-region tig00016944_1 1 15686
##sequence-region tig00016959_1 1 7001
##sequence-region tig00017039_1 1 9021
##sequence-region tig00017104_1 1 11650
##sequence-region tig00017165_1 1 18707
##sequence-region tig00017171_1 1 31806
##sequence-region tig00017199_1 1 17975
##sequence-region tig00017232_1 1 60115
##sequence-region tig00017362_1 1 14335
##sequence-region tig00017383_1 1 19683
##sequence-region tig00017401_1 1 34302
##sequence-region tig00017503_1 1 11592
##sequence-region tig00017613_1 1 17772
##sequence-region tig00017707_1 1 24032
##sequence-region tig00017798_1 1 30020
##sequence-region tig00017817_1 1 25338
##sequence-region tig00017925_1 1 64673
##sequence-region tig00017927_1 1 19527
##sequence-region tig00018004_1 1 49352
##sequence-region tig00018051_1 1 7427
##sequence-region tig00018086_1 1 19997
##sequence-region tig00018112_1 1 2634
##sequence-region tig00018150_1 1 44452
##sequence-region tig00018155_1 1 2863
##sequence-region tig00018202_1 1 10492
##sequence-region tig00018250_1 1 18038
##sequence-region tig00018252_1 1 15079
##sequence-region tig00018398_1 1 8665
##sequence-region tig00018403_1 1 27397
##sequence-region tig00018568_1 1 11245
##sequence-region tig00018598_1 1 15321
##sequence-region tig00018607_1 1 17251
##sequence-region tig00018620_1 1 6211
##sequence-region tig00018645_1 1 14793
##sequence-region tig00018697_1 1 20149
##sequence-region tig00018792_1 1 10655
##sequence-region tig00018857_1 1 18691
##sequence-region tig00018866_1 1 11601
##sequence-region tig00018891_1 1 7793
##sequence-region tig00018921_1 1 12933
##sequence-region tig00018928_1 1 18405
##sequence-region tig00018944_1 1 12390
##sequence-region tig00018999_1 1 9756
##sequence-region tig00019027_1 1 15560
##sequence-region tig00019048_1 1 5027
##sequence-region tig00019080_1 1 20898
##sequence-region tig00019112_1 1 16983
##sequence-region tig00019307_1 1 11529
##sequence-region tig00019319_1 1 12767
##sequence-region tig00019439_1 1 25886
##sequence-region tig00019488_1 1 12665
##sequence-region tig00019531_1 1 20301
##sequence-region tig00019579_1 1 15665
##sequence-region tig00019582_1 1 7368
##sequence-region tig00019708_1 1 40686
##sequence-region tig00019781_1 1 30377
##sequence-region tig00019822_1 1 50160
##sequence-region tig00019851_1 1 18290
##sequence-region tig00019875_1 1 38970
##sequence-region tig00019981_1 1 13287
##sequence-region tig00019984_1 1 10080
##sequence-region tig00020018_1 1 15459
##sequence-region tig00020045_1 1 44981
##sequence-region tig00020208_1 1 33657
##sequence-region tig00020217_1 1 39398
##sequence-region tig00020309_1 1 9668
##sequence-region tig00020407_1 1 5543
##sequence-region tig00020415_1 1 28077
##sequence-region tig00020475_1 1 17500
##sequence-region tig00020641_1 1 15097
##sequence-region tig00020906_1 1 16323
##sequence-region tig00020925_1 1 13411
##sequence-region tig00021165_1 1 12353
##sequence-region tig00021188_1 1 14408
##sequence-region tig00021192_1 1 3996
##sequence-region tig00021297_1 1 19229
##sequence-region tig00021357_1 1 11402
##sequence-region tig00021395_1 1 48890
##sequence-region tig00021463_1 1 22991
##sequence-region tig00021621_1 1 1494
##sequence-region tig00021633_1 1 13874
##sequence-region tig00021665_1 1 18924
##sequence-region tig00021698_1 1 13387
##sequence-region tig00021763_1 1 18570
##sequence-region tig00021955_1 1 7151
##sequence-region tig00021980_1 1 19076
##sequence-region tig00022018_1 1 2392
##sequence-region tig00022030_1 1 4935
##sequence-region tig00022034_1 1 14347
##sequence-region tig00022183_1 1 4712
##sequence-region tig00022274_1 1 18250
##sequence-region tig00022361_1 1 3181
##sequence-region tig00022364_1 1 12916
##sequence-region tig00022454_1 1 4346
##sequence-region tig00022467_1 1 23816
##sequence-region tig00022561_1 1 11717
##sequence-region tig00022655_1 1 16903
##sequence-region tig00022667_1 1 2690
##sequence-region tig00022802_1 1 11104
##sequence-region tig00022806_1 1 6118
##sequence-region tig00022819_1 1 14925
##sequence-region tig00022838_1 1 7778
##sequence-region tig00022862_1 1 12765
##sequence-region tig00022886_1 1 3396
##sequence-region tig00022952_1 1 14579
##sequence-region tig00022956_1 1 16741
##sequence-region tig00022975_1 1 13025
##sequence-region tig00023091_1 1 8261
##sequence-region tig00023101_1 1 14648
##sequence-region tig00023167_1 1 11124
##sequence-region tig00023223_1 1 20645
##sequence-region tig00023268_1 1 3355
##sequence-region tig00023294_1 1 5400
##sequence-region tig00023295_1 1 3692
##sequence-region tig00023409_1 1 8829
##sequence-region tig00023453_1 1 9570
##sequence-region tig00023544_1 1 1106
##sequence-region tig00023553_1 1 3816
##sequence-region tig00023560_1 1 11760
##sequence-region tig00023561_1 1 28367
##sequence-region tig00023568_1 1 1123
##sequence-region tig00023659_1 1 5582
##sequence-region tig00023727_1 1 1510
##sequence-region tig00023731_1 1 19764
##sequence-region tig00023793_1 1 4167
##sequence-region tig00023813_1 1 7634
##sequence-region tig00023934_1 1 12045
##sequence-region tig00023943_1 1 6540
##sequence-region tig00024000_1 1 13149
##sequence-region tig00024075_1 1 18057
##sequence-region tig00024093_1 1 2245
##sequence-region tig00024219_1 1 19339
##sequence-region tig00024383_1 1 23161
##sequence-region tig00024474_1 1 15177
##sequence-region tig00024587_1 1 3933
##sequence-region tig00024619_1 1 16690
##sequence-region tig00024623_1 1 9089
##sequence-region tig00024753_1 1 14964
##sequence-region tig00024870_1 1 9194
##sequence-region tig00024927_1 1 13498
##sequence-region tig00024942_1 1 18379
##sequence-region tig00024987_1 1 1240
##sequence-region tig00025027_1 1 5153
##sequence-region tig00025193_1 1 15895
##sequence-region tig00025236_1 1 87343
##sequence-region tig00025350_1 1 6959
##sequence-region tig00025403_1 1 26723
##sequence-region tig00025426_1 1 5265
##sequence-region tig00025440_1 1 5739
##sequence-region tig00025510_1 1 19392
##sequence-region tig00025615_1 1 9519
##sequence-region tig00025632_1 1 12090
##sequence-region tig00025804_1 1 16425
##sequence-region tig00026068_1 1 12604
##sequence-region tig00026120_1 1 1811
##sequence-region tig00026496_1 1 4395
##sequence-region tig00026768_1 1 2744
##sequence-region tig00026869_1 1 10261
##sequence-region tig00026904_1 1 2089
##sequence-region tig00026974_1 1 11459
##sequence-region tig00027034_1 1 8946
##sequence-region tig00027067_1 1 12126
##sequence-region tig00027388_1 1 8026
##sequence-region tig00027456_1 1 3005
##sequence-region tig00059793_1 1 867813
##sequence-region tig00059802_1 1 21202
##sequence-region tig00059822_1 1 77504
##sequence-region tig00059833_1 1 27194
##sequence-region tig00059899_1 1 43530
##sequence-region tig00059927_1 1 54758
##sequence-region tig00059988_1 1 682827
##sequence-region tig00060057_1 1 1532017
##sequence-region tig00060071_1 1 926759
##sequence-region tig00060130_1 1 499427
##sequence-region tig00060143_1 1 64172
##sequence-region tig00060151_1 1 353758
##sequence-region tig00060211_1 1 83671
##sequence-region tig00060220_1 1 11254
##sequence-region tig00060221_1 1 1697
##sequence-region tig00060285_1 1 1767871
##sequence-region tig00060294_1 1 757178
##sequence-region tig00060337_1 1 340016
##sequence-region tig00060377_1 1 526983
##sequence-region tig00060384_1 1 413057
##sequence-region tig00060442_1 1 119291
##sequence-region tig00060472_1 1 377183
##sequence-region tig00060475_1 1 69424
##sequence-region tig00060491_1 1 536331
##sequence-region tig00060514_1 1 953316
##sequence-region tig00060559_1 1 16392
##sequence-region tig00060573_1 1 12204
##sequence-region tig00060591_1 1 15188
##sequence-region tig00060595_1 1 93290
##sequence-region tig00060676_1 1 320227
##sequence-region tig00060697_1 1 68834
##sequence-region tig00060709_1 1 324696
##sequence-region tig00060713_1 1 25047
##sequence-region tig00060725_1 1 142889
##sequence-region tig00060826_1 1 84925
##sequence-region tig00060891_1 1 506298
##sequence-region tig00060922_1 1 109779
##sequence-region tig00060938_1 1 311695
##sequence-region tig00060939_1 1 16934
##sequence-region tig00061059_1 1 370327
##sequence-region tig00061105_1 1 261706
##sequence-region tig00061111_1 1 90166
##sequence-region tig00061119_1 1 335304
##sequence-region tig00061127_1 1 103182
##sequence-region tig00061136_1 1 436477
##sequence-region tig00061190_1 1 10949
##sequence-region tig00061203_1 1 183303
##sequence-region tig00061216_1 1 41596
##sequence-region tig00061229_1 1 158420
##sequence-region tig00061252_1 1 1291364
##sequence-region tig00061278_1 1 10844
##sequence-region tig00061281_1 1 384452
##sequence-region tig00061282_1 1 616785
##sequence-region tig00061313_1 1 186661
##sequence-region tig00061322_1 1 13067
##sequence-region tig00061365_1 1 166807
##sequence-region tig00061371_1 1 370552
##sequence-region tig00061372_1 1 389596
##sequence-region tig00061379_1 1 16003
##sequence-region tig00061415_1 1 26472
##sequence-region tig00061424_1 1 359523
##sequence-region tig00061467_1 1 119351
##sequence-region tig00061479_1 1 387467
##sequence-region tig00061497_1 1 559700
##sequence-region tig00061526_1 1 477702
##sequence-region tig00061565_1 1 132505
##sequence-region tig00061583_1 1 66214
##sequence-region tig00061596_1 1 716763
##sequence-region tig00061597_1 1 272139
##sequence-region tig00061657_1 1 79201
##sequence-region tig00061690_1 1 67573
##sequence-region tig00061704_1 1 559075
##sequence-region tig00061774_1 1 52161
##sequence-region tig00061775_1 1 240366
##sequence-region tig00061812_1 1 98442
##sequence-region tig00061883_1 1 14006
##sequence-region tig00061924_1 1 43738
##sequence-region tig00061937_1 1 398516
##sequence-region tig00061982_1 1 136887
##sequence-region tig00061983_1 1 6554
##sequence-region tig00062016_1 1 839470
##sequence-region tig00062073_1 1 154645
##sequence-region tig00062094_1 1 397271
##sequence-region tig00062100_1 1 449949
##sequence-region tig00062158_1 1 64961
##sequence-region tig00062160_1 1 14130
##sequence-region tig00062186_1 1 4732
##sequence-region tig00062234_1 1 588200
##sequence-region tig00062251_1 1 404312
##sequence-region tig00062316_1 1 264995
##sequence-region tig00062451_1 1 487053
##sequence-region tig00062456_1 1 190301
##sequence-region tig00062498_1 1 171976
##sequence-region tig00062537_1 1 121017
##sequence-region tig00062640_1 1 96556
##sequence-region tig00062731_1 1 257810
##sequence-region tig00062744_1 1 92068
##sequence-region tig00062764_1 1 305466
##sequence-region tig00062811_1 1 218120
##sequence-region tig00062842_1 1 28722
##sequence-region tig00062849_1 1 15787
##sequence-region tig00062850_1 1 286560
##sequence-region tig00062879_1 1 99827
##sequence-region tig00062915_1 1 129421
##sequence-region tig00063048_1 1 206144
##sequence-region tig00063133_1 1 11046
##sequence-region tig00063138_1 1 519761
##sequence-region tig00063225_1 1 110871
##sequence-region tig00063234_1 1 297553
##sequence-region tig00063353_1 1 6741
##sequence-region tig00063355_1 1 31659
##sequence-region tig00063359_1 1 67498
##sequence-region tig00063396_1 1 156202
##sequence-region tig00063417_1 1 44452
##sequence-region tig00063475_1 1 178126
##sequence-region tig00063485_1 1 20346
##sequence-region tig00063492_1 1 447279
##sequence-region tig00063513_1 1 122833
##sequence-region tig00063526_1 1 9927
##sequence-region tig00063608_1 1 122118
##sequence-region tig00063776_1 1 19700
##sequence-region tig00063785_1 1 316465
##sequence-region tig00063786_1 1 13618
##sequence-region tig00063803_1 1 88685
##sequence-region tig00063869_1 1 71087
##sequence-region tig00063905_1 1 252346
##sequence-region tig00063922_1 1 11838
##sequence-region tig00063929_1 1 228211
##sequence-region tig00063933_1 1 62242
##sequence-region tig00063940_1 1 15842
##sequence-region tig00063972_1 1 127213
##sequence-region tig00064054_1 1 120880
##sequence-region tig00064119_1 1 11346
##sequence-region tig00064138_1 1 112107
##sequence-region tig00064173_1 1 13763
##sequence-region tig00064208_1 1 183932
##sequence-region tig00064297_1 1 58536
##sequence-region tig00064304_1 1 220806
##sequence-region tig00064307_1 1 231567
##sequence-region tig00064331_1 1 188138
##sequence-region tig00064394_1 1 10249
##sequence-region tig00064429_1 1 75508
##sequence-region tig00064442_1 1 376725
##sequence-region tig00064453_1 1 24118
##sequence-region tig00064462_1 1 35767
##sequence-region tig00064491_1 1 21769
##sequence-region tig00064552_1 1 12574
##sequence-region tig00064667_1 1 24457
##sequence-region tig00064674_1 1 28170
##sequence-region tig00064784_1 1 40993
##sequence-region tig00065023_1 1 80728
##sequence-region tig00065134_1 1 141218
##sequence-region tig00065145_1 1 158074
##sequence-region tig00065200_1 1 176710
##sequence-region tig00065250_1 1 81054
##sequence-region tig00065256_1 1 56206
##sequence-region tig00065272_1 1 13299
##sequence-region tig00065327_1 1 111574
##sequence-region tig00065372_1 1 51251
##sequence-region tig00065393_1 1 100187
##sequence-region tig00065431_1 1 57872
##sequence-region tig00065445_1 1 30315
##sequence-region tig00065462_1 1 13981
##sequence-region tig00065478_1 1 226464
##sequence-region tig00065512_1 1 146889
##sequence-region tig00065534_1 1 73486
##sequence-region tig00065554_1 1 107634
##sequence-region tig00065576_1 1 116058
##sequence-region tig00065636_1 1 38408
##sequence-region tig00065637_1 1 5945
##sequence-region tig00065639_1 1 8470
##sequence-region tig00065658_1 1 116853
##sequence-region tig00065684_1 1 141071
##sequence-region tig00065719_1 1 30613
##sequence-region tig00065721_1 1 1881
##sequence-region tig00065731_1 1 33275
##sequence-region tig00065798_1 1 63615
##sequence-region tig00065886_1 1 5784
##sequence-region tig00065956_1 1 72695
##sequence-region tig00065992_1 1 3584
##sequence-region tig00066054_1 1 8653
##sequence-region tig00066182_1 1 23832
##sequence-region tig00066217_1 1 43350
##sequence-region tig00066220_1 1 7932
##sequence-region tig00066235_1 1 9429
##sequence-region tig00066247_1 1 40903
##sequence-region tig00066262_1 1 2531
##sequence-region tig00066264_1 1 10430
##sequence-region tig00066267_1 1 15516
##sequence-region tig00066307_1 1 4454
##sequence-region tig00066322_1 1 20495
##sequence-region tig00066378_1 1 14170
##sequence-region tig00066409_1 1 11934
##sequence-region tig00066442_1 1 12444
##sequence-region tig00066518_1 1 22190
##sequence-region tig00066556_1 1 11994
##sequence-region tig00066652_1 1 10659
##sequence-region tig00066663_1 1 12223
##sequence-region tig00066730_1 1 2939
##sequence-region tig00066876_1 1 2309
##sequence-region tig00066887_1 1 2016
##sequence-region tig00066929_1 1 17226
##sequence-region tig00066941_1 1 1657
##sequence-region tig00066952_1 1 1269
##sequence-region tig00066957_1 1 10105
##sequence-region tig00067010_1 1 1942
##sequence-region tig00067017_1 1 9310
##sequence-region tig00067023_1 1 3070
##sequence-region tig00067055_1 1 3244
##sequence-region tig00067078_1 1 8180
tig00000029_1 . insertion 262 262 . . . reference=.;variantSeq=C;coverage=26;confidence=93
tig00000029_1 . deletion 429 429 . . . reference=T;variantSeq=.;coverage=27;confidence=43
tig00000029_1 . insertion 451 451 . . . reference=.;variantSeq=T;coverage=27;confidence=33
tig00000029_1 . insertion 1193 1193 . . . reference=.;variantSeq=G;coverage=31;confidence=88
tig00000029_1 . insertion 1921 1921 . . . reference=.;variantSeq=GAGAGA;coverage=53;confidence=93
tig00000029_1 . insertion 2759 2759 . . . reference=.;variantSeq=A;coverage=56;confidence=93
tig00000029_1 . insertion 2950 2950 . . . reference=.;variantSeq=T;coverage=58;confidence=83
tig00000029_1 . substitution 3480 3480 . . . reference=A;variantSeq=G;coverage=51;confidence=93
tig00000029_1 . substitution 3615 3615 . . . reference=T;variantSeq=A;coverage=52;confidence=93
tig00000029_1 . insertion 4280 4280 . . . reference=.;variantSeq=CA;coverage=55;confidence=93
tig00000029_1 . deletion 5636 5636 . . . reference=A;variantSeq=.;coverage=54;confidence=93
tig00000029_1 . substitution 5640 5640 . . . reference=G;variantSeq=A;coverage=55;confidence=93
tig00000029_1 . insertion 6294 6294 . . . reference=.;variantSeq=CCC;coverage=50;confidence=20
tig00000029_1 . deletion 12134 12135 . . . reference=AC;variantSeq=.;coverage=89;confidence=93
tig00000029_1 . substitution 14603 14603 . . . reference=G;variantSeq=C;coverage=50;confidence=93
tig00000029_1 . insertion 14615 14615 . . . reference=.;variantSeq=AGAGAGAGAGAGAGAGAG;coverage=49;confidence=93
tig00000029_1 . insertion 16475 16475 . . . reference=.;variantSeq=GT;coverage=66;confidence=93
tig00000029_1 . insertion 17757 17757 . . . reference=.;variantSeq=AC;coverage=68;confidence=93
tig00000029_1 . insertion 17860 17860 . . . reference=.;variantSeq=CACA;coverage=68;confidence=93
tig00000029_1 . insertion 18758 18758 . . . reference=.;variantSeq=AC;coverage=56;confidence=93
tig00000029_1 . insertion 20146 20146 . . . reference=.;variantSeq=G;coverage=65;confidence=93
tig00000029_1 . deletion 20511 20512 . . . reference=GT;variantSeq=.;coverage=54;confidence=93
tig00000029_1 . insertion 20847 20847 . . . reference=.;variantSeq=CCC;coverage=47;confidence=22
tig00000029_1 . deletion 20882 20882 . . . reference=C;variantSeq=.;coverage=46;confidence=27
tig00000029_1 . insertion 21207 21207 . . . reference=.;variantSeq=T;coverage=47;confidence=93
tig00000029_1 . insertion 21509 21509 . . . reference=.;variantSeq=GTGT;coverage=47;confidence=93
tig00000029_1 . insertion 21768 21768 . . . reference=.;variantSeq=C;coverage=48;confidence=93
tig00000029_1 . insertion 21912 21912 . . . reference=.;variantSeq=A;coverage=45;confidence=93
tig00000029_1 . insertion 22570 22570 . . . reference=.;variantSeq=GA;coverage=49;confidence=93
tig00000029_1 . insertion 24233 24233 . . . reference=.;variantSeq=A;coverage=93;confidence=93
tig00000029_1 . substitution 24244 24244 . . . reference=C;variantSeq=A;coverage=95;confidence=93
tig00000029_1 . substitution 24257 24257 . . . reference=C;variantSeq=A;coverage=95;confidence=71
tig00000029_1 . insertion 28373 28373 . . . reference=.;variantSeq=A;coverage=50;confidence=93
tig00000029_1 . insertion 29173 29173 . . . reference=.;variantSeq=TCTC;coverage=81;confidence=93
tig00000029_1 . insertion 29454 29454 . . . reference=.;variantSeq=CTTTC;coverage=67;confidence=80
tig00000029_1 . insertion 29455 29455 . . . reference=.;variantSeq=C;coverage=67;confidence=93
tig00000029_1 . insertion 29583 29583 . . . reference=.;variantSeq=TC;coverage=70;confidence=93
tig00000029_1 . deletion 29842 29842 . . . reference=T;variantSeq=.;coverage=78;confidence=93
tig00000029_1 . substitution 29843 29843 . . . reference=C;variantSeq=A;coverage=78;confidence=93
tig00000029_1 . insertion 30717 30717 . . . reference=.;variantSeq=A;coverage=92;confidence=93
tig00000029_1 . insertion 31268 31268 . . . reference=.;variantSeq=C;coverage=106;confidence=78
tig00000029_1 . insertion 38980 38980 . . . reference=.;variantSeq=G;coverage=112;confidence=68
tig00000029_1 . insertion 39094 39094 . . . reference=.;variantSeq=AGAG;coverage=104;confidence=93
tig00000029_1 . insertion 51531 51531 . . . reference=.;variantSeq=CTCT;coverage=109;confidence=93
tig00000029_1 . insertion 51624 51624 . . . reference=.;variantSeq=CT;coverage=110;confidence=93
tig00000029_1 . insertion 53531 53531 . . . reference=.;variantSeq=C;coverage=106;confidence=71
tig00000029_1 . insertion 56259 56259 . . . reference=.;variantSeq=G;coverage=87;confidence=20
tig00000029_1 . insertion 56295 56295 . . . reference=.;variantSeq=C;coverage=89;confidence=52
tig00000029_1 . insertion 56354 56354 . . . reference=.;variantSeq=TG;coverage=91;confidence=93
tig00000029_1 . insertion 56652 56652 . . . reference=.;variantSeq=A;coverage=101;confidence=21
tig00000029_1 . insertion 56816 56816 . . . reference=.;variantSeq=CA;coverage=103;confidence=93
tig00000029_1 . insertion 57748 57748 . . . reference=.;variantSeq=GA;coverage=99;confidence=93
tig00000029_1 . insertion 63114 63114 . . . reference=.;variantSeq=ACACAC;coverage=92;confidence=93

[aureliendejode]

Hello Arang,

I am in the final steps of the assembly for my genome before scaffolding and I'd really like to get going with merfin.
Any news about this ?

Thanks for your help