Comments (5)
ar4
commented on August 29, 2024
Hi Yong,
It's good to hear from you again. I hope that you are well and enjoying the new job.
Compiling the native code causes trouble for so many people that I wonder whether I should just rewrite it in Python, even if it makes it a bit slower. In your case it looks like there is a compiler bug that is causing it to expand "-march=native" into "-march=tigerlake" even though the "tigerlake" option is not supported by your compiler. I thus agree with your analysis that switching to GCC 10 should solve the problem. Another solution that might be quicker is to download the Deepwave code (git clone --depth=1 https://github.com/ar4/deepwave.git) and modify the compilation command (in setup.py) to remove the '-march=native' bits and then install this local version (pip install .). If you would instead prefer to switch to GCC 10, then I think you can specify which compiler to use with environment variables (CXX=<path to GCC 10 C++ compiler> pip install deepwave). I hope that works. Let me know how it goes.
-Alan
from deepwave.
yongmayer
commented on August 29, 2024
Hi Alan,
That's great! After I installed and switched to gcc-10, it successfully installed deepwave-0.0.9.
I also agree that making it python native sounds very attractive.
On a slightly different note, I noticed from another thread regarding the 8th order implementation. However, the installation for that version is not successful. FYI, the following error message:
Thank you very much,
Yong
(seis) yma@lambda [~]$ pip install git+https://github.com/ar4/deepwave.git@8th-order
Collecting git+https://github.com/ar4/deepwave.git@8th-order
Cloning https://github.com/ar4/deepwave.git (to revision 8th-order) to /tmp/pip-req-build-3vx65ncm
Running command git clone -q https://github.com/ar4/deepwave.git /tmp/pip-req-build-3vx65ncm
Running command git checkout -b 8th-order --track origin/8th-order
Switched to a new branch '8th-order'
Branch '8th-order' set up to track remote branch '8th-order' from 'origin'.
Resolved https://github.com/ar4/deepwave.git to commit 30d99d7434494747ee59dbe565bfb47b6f78b42b
Requirement already satisfied: numpy in ./anaconda3/envs/seis/lib/python3.9/site-packages (from deepwave==0.0.8) (1.21.2)
Requirement already satisfied: scipy in ./anaconda3/envs/seis/lib/python3.9/site-packages (from deepwave==0.0.8) (1.7.3)
Requirement already satisfied: torch>=1.7.1 in ./anaconda3/envs/seis/lib/python3.9/site-packages (from deepwave==0.0.8) (1.10.1)
Requirement already satisfied: typing_extensions in ./anaconda3/envs/seis/lib/python3.9/site-packages (from torch>=1.7.1->deepwave==0.0.8) (3.10.0.2)
Building wheels for collected packages: deepwave
Building wheel for deepwave (setup.py) ... error
ERROR: Command errored out with exit status 1:
command: /home/yxm906/anaconda3/envs/seis/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' bdist_wheel -d /tmp/pip-wheel-612y98av
cwd: /tmp/pip-req-build-3vx65ncm/
Complete output (72 lines):
Warning: 'classifiers' should be a list, got type 'tuple'
running bdist_wheel
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/utils/cpp_extension.py:381: UserWarning: Attempted to use ninja as the BuildExtension backend but we could not find ninja.. Falling back to using the slow distutils backend.
warnings.warn(msg.format('we could not find ninja.'))
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/deepwave
copying deepwave/wavelets.py -> build/lib.linux-x86_64-3.9/deepwave
copying deepwave/__init__.py -> build/lib.linux-x86_64-3.9/deepwave
copying deepwave/utils.py -> build/lib.linux-x86_64-3.9/deepwave
creating build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/scalar.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/scalar_born.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/__init__.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
creating build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/pad.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/model.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/propagator.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/extract.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/__init__.py -> build/lib.linux-x86_64-3.9/deepwave/base
running build_ext
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/utils/cpp_extension.py:782: UserWarning: The detected CUDA version (11.1) has a minor version mismatch with the version that was used to compile PyTorch (11.3). Most likely this shouldn't be a problem.
warnings.warn(CUDA_MISMATCH_WARN.format(cuda_str_version, torch.version.cuda))
building 'scalar1d_cpu_iso_8_float' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/deepwave
creating build/temp.linux-x86_64-3.9/deepwave/scalar
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar_cpu.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar_cpu.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar_wrapper.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar_wrapper.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
<command-line>: error: expected ‘>’ before numeric constant
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:34:32: note: in expansion of macro ‘DIM’
34 | template <bool DIM = false>
| ^~~
In file included from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeFunctions.h:6,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/TensorIndexing.h:11,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/ATen.h:20,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/extension.h:4,
from deepwave/scalar/scalar_wrapper.cpp:1:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: In member function ‘at::meta::structured_all_dim::precompute_out<true> at::meta::structured_all_dim::precompute_out<<anonymous> >::set_dim(int64_t)’:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:38:43: error: static assertion failed: dim already set
38 | static_assert(DIM == false, "dim already set");
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: At global scope:
<command-line>: error: expected ‘>’ before numeric constant
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:51:32: note: in expansion of macro ‘DIM’
51 | template <bool DIM = false>
| ^~~
In file included from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeFunctions.h:6,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/TensorIndexing.h:11,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/ATen.h:20,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/extension.h:4,
from deepwave/scalar/scalar_wrapper.cpp:1:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: In member function ‘at::meta::structured_any_dim::precompute_out<true> at::meta::structured_any_dim::precompute_out<<anonymous> >::set_dim(int64_t)’:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:55:43: error: static assertion failed: dim already set
55 | static_assert(DIM == false, "dim already set");
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Failed building wheel for deepwave
Running setup.py clean for deepwave
Failed to build deepwave
Installing collected packages: deepwave
Running setup.py install for deepwave ... error
ERROR: Command errored out with exit status 1:
command: /home/yxm906/anaconda3/envs/seis/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-pkuwdw4n/install-record.txt --single-version-externally-managed --compile --install-headers /home/yxm906/anaconda3/envs/seis/include/python3.9/deepwave
cwd: /tmp/pip-req-build-3vx65ncm/
Complete output (72 lines):
Warning: 'classifiers' should be a list, got type 'tuple'
running install
running build
running build_py
creating build
creating build/lib.linux-x86_64-3.9
creating build/lib.linux-x86_64-3.9/deepwave
copying deepwave/wavelets.py -> build/lib.linux-x86_64-3.9/deepwave
copying deepwave/__init__.py -> build/lib.linux-x86_64-3.9/deepwave
copying deepwave/utils.py -> build/lib.linux-x86_64-3.9/deepwave
creating build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/scalar.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/scalar_born.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
copying deepwave/scalar/__init__.py -> build/lib.linux-x86_64-3.9/deepwave/scalar
creating build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/pad.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/model.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/propagator.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/extract.py -> build/lib.linux-x86_64-3.9/deepwave/base
copying deepwave/base/__init__.py -> build/lib.linux-x86_64-3.9/deepwave/base
running build_ext
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/utils/cpp_extension.py:381: UserWarning: Attempted to use ninja as the BuildExtension backend but we could not find ninja.. Falling back to using the slow distutils backend.
warnings.warn(msg.format('we could not find ninja.'))
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/utils/cpp_extension.py:782: UserWarning: The detected CUDA version (11.1) has a minor version mismatch with the version that was used to compile PyTorch (11.3). Most likely this shouldn't be a problem.
warnings.warn(CUDA_MISMATCH_WARN.format(cuda_str_version, torch.version.cuda))
building 'scalar1d_cpu_iso_8_float' extension
creating build/temp.linux-x86_64-3.9
creating build/temp.linux-x86_64-3.9/deepwave
creating build/temp.linux-x86_64-3.9/deepwave/scalar
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar_cpu.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar_cpu.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
gcc -pthread -B /home/yxm906/anaconda3/envs/seis/compiler_compat -Wno-unused-result -Wsign-compare -DNDEBUG -O2 -Wall -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -I/home/yxm906/anaconda3/envs/seis/include -fPIC -O2 -isystem /home/yxm906/anaconda3/envs/seis/include -fPIC -DDIM=1 -DTYPE=float -Ideepwave/scalar -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/TH -I/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/THC -I/home/yxm906/anaconda3/envs/seis/include/python3.9 -c deepwave/scalar/scalar_wrapper.cpp -o build/temp.linux-x86_64-3.9/deepwave/scalar/scalar_wrapper.o -Ofast -march=native -fopenmp -DTORCH_API_INCLUDE_EXTENSION_H -DPYBIND11_COMPILER_TYPE="_gcc" -DPYBIND11_STDLIB="_libstdcpp" -DPYBIND11_BUILD_ABI="_cxxabi1011" -DTORCH_EXTENSION_NAME=scalar1d_cpu_iso_8_float -D_GLIBCXX_USE_CXX11_ABI=0 -std=c++14
<command-line>: error: expected ‘>’ before numeric constant
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:34:32: note: in expansion of macro ‘DIM’
34 | template <bool DIM = false>
| ^~~
In file included from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeFunctions.h:6,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/TensorIndexing.h:11,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/ATen.h:20,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/extension.h:4,
from deepwave/scalar/scalar_wrapper.cpp:1:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: In member function ‘at::meta::structured_all_dim::precompute_out<true> at::meta::structured_all_dim::precompute_out<<anonymous> >::set_dim(int64_t)’:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:38:43: error: static assertion failed: dim already set
38 | static_assert(DIM == false, "dim already set");
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: At global scope:
<command-line>: error: expected ‘>’ before numeric constant
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:51:32: note: in expansion of macro ‘DIM’
51 | template <bool DIM = false>
| ^~~
In file included from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeFunctions.h:6,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/TensorIndexing.h:11,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/ATen.h:20,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/types.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader_options.h:4,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/base.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader/stateful.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data/dataloader.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/data.h:3,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/csrc/api/include/torch/all.h:8,
from /home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/torch/extension.h:4,
from deepwave/scalar/scalar_wrapper.cpp:1:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h: In member function ‘at::meta::structured_any_dim::precompute_out<true> at::meta::structured_any_dim::precompute_out<<anonymous> >::set_dim(int64_t)’:
/home/yxm906/anaconda3/envs/seis/lib/python3.9/site-packages/torch/include/ATen/NativeMetaFunctions.h:55:43: error: static assertion failed: dim already set
55 | static_assert(DIM == false, "dim already set");
error: command '/usr/bin/gcc' failed with exit code 1
----------------------------------------
ERROR: Command errored out with exit status 1: /home/yxm906/anaconda3/envs/seis/bin/python -u -c 'import io, os, sys, setuptools, tokenize; sys.argv[0] = '"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"'; __file__='"'"'/tmp/pip-req-build-3vx65ncm/setup.py'"'"';f = getattr(tokenize, '"'"'open'"'"', open)(__file__) if os.path.exists(__file__) else io.StringIO('"'"'from setuptools import setup; setup()'"'"');code = f.read().replace('"'"'\r\n'"'"', '"'"'\n'"'"');f.close();exec(compile(code, __file__, '"'"'exec'"'"'))' install --record /tmp/pip-record-pkuwdw4n/install-record.txt --single-version-externally-managed --compile --install-headers /home/yxm906/anaconda3/envs/seis/include/python3.9/deepwave Check the logs for full command output.
from deepwave.
ar4
commented on August 29, 2024
That's great, and I'm glad that the fix was so easy.
I think the 8th order version should work now (I had to rename some macros to avoid a conflict as recent PyTorch versions have also started using the same names). I haven't integrated the ability to switch to the 8th order version in the master branch as the results didn't look much less dispersive to me (maybe even higher order of accuracy is needed), but hopefully it is still useful.
from deepwave.
yongmayer
commented on August 29, 2024
That was quick! Thank you, Alan!
from deepwave.
ar4
commented on August 29, 2024
Hi Yong,
The ability to select the 8th order propagator (as well as 2nd, 4th, or 6th), as well as a better PML and other improvements, is now included in the master branch. Unfortunately the performance of the pure TorchScript version that I hoped to use was inadequate, so it is still necessary to compile C++/CUDA code. I am trying a slightly different approach to that now, though, which might be less problematic for users (but I expect it will still be the main source of issues). The current implementation of the new PML makes this release a bit slower than the previous one, but I hope to reduce the difference in the next release.
-Alan
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Related Issues (20)
- AttributeError: module 'deepwave' has no attribute 'wavelets' HOT 4
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