Comments (1)
aquaskyline
commented on August 20, 2024
16GT doesn't do population calling, you can only provide a BAM a time. 16GT is compatible with hs38dh as long as the input BAM file was generated using the same reference genome. 16GT doesn't treat ALT contigs specifically, variants on ALT contigs will be generated if alignments exist. If you want to eliminate the results on ALT contigs, filter the VCF file afterward or align to a reference without the ALT contigs.
from 16gt.
Related Issues (11)
- make error 16GT on mac HOT 2
- MMUnitAllocate() : cannot allocate memory!
- need help for 16gt install-------Makefile:11: recipe for target 'snapshotSnpcaller' failed HOT 1
- Compilations issues with SOAP and BGS HOT 7
- RNA Support HOT 1
- How to call somatic mutations using 16GT? HOT 2
- Segmentaiton fault HOT 5
- Could you elaborate more on the steps?
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- How to set CPU number? Number of threads? Segmentation fault (core dumped) HOT 1
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from 16gt.