Comments (2)
This issue doesn't seem to be a bug with geNomad. It seems that an outdated version of pyrodigal was installed instead. You need to ensure that you have pyrodigal version 3.1.0 or higher, which should have been installed automatically. Could you please tell me how you installed geNomad?
To resolve this issue, you should attempt to update pyrodigal.
from genomad.
I tried version 1.7.0 and it works, but there is a problem with 1.7.1.
I installed it with conda. I think I also checked the pyridogal version and it is up-to-date. It could be a conflict in my own environment that needs further investigation.
For now, I am happy with version 1.7.0 until the next major update.
from genomad.
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from genomad.