Comments (5)
apcamargo
commented on July 29, 2024
The Zenodo release should have the version.txt file. Which version of the database did you download? I'll check that
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chengzhongyi8
commented on July 29, 2024
I download dbv1.3 (https://zenodo.org/record/7793532).
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apcamargo
commented on July 29, 2024
I just downloaded it and version.txt is there. Not really sure what happened on your end, but you can just create the version.txt file within the genomad_db_v1.3 directory. Just run this command:
echo "1.3" > genomad_db_v1.3/version.txt
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chengzhongyi8
commented on July 29, 2024
Thanks a lot!
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apcamargo
commented on July 29, 2024
No problem!
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Related Issues (20)
- Error downloading database HOT 2
- Inquiry on virus from MAG HOT 4
- [feature request] query database clustering HOT 1
- Whether measures have been taken by genomad to avoid identifying genomic islands as viruses? HOT 5
- AMR annotations on chromsome? HOT 1
- Errors when download and the same issue when running genomad -h HOT 3
- The virus identified by genomad weren't annotated as virus sequence by VIBRANT? HOT 3
- geNomad taxonomy about Baltimore classification HOT 1
- Error with geNomad v1.8.0, missing tensorflow.keras HOT 5
- mmseqs2 error HOT 3
- Different protein number from genomad and pyrodigal-gv HOT 2
- Small (reference) data for testing HOT 9
- Error while classifying sequences HOT 6
- Error mmseqs prefilter HOT 4
- genomad annotate fastq file is empty or contains multiple entries HOT 3
- plasmid classified as virus? HOT 7
- Optimization Request for Analyzing Large Number of MAGs with geNomad HOT 5
- Fewer viral contigs identified from genomad vs virsorter2 HOT 4
- The question about --disable-nn-classification HOT 1
- Provirus detection in genomad vs checkv HOT 6
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