apascualgarcia Goto Github PK

apascualgarcia.github.io

Personal website

brc1net

A web based app developed using the R package shiny to explore the transcriptional network downstream from the Arabidopsis thaliana transcriptional factor BRC1.

consumersresources

Code for the consumers resource project (MS.c. Léo Buchenel)

contact_divergence

Software related with the paper: Quantifying the evolutionary divergence of protein structures: the role of function change and function conservation, Pascual-Garci­a et al _Proteins_ 2010 78:181-96

cross_over_prot_struct

Supplementary material presented in the manuscript Pascual-Garcia A, Abia D, Ortiz AR, Bastolla U, 2009 Cross-Over between Discrete and Continuous Protein Structure Space: Insights into Automatic Classification and Networks of Protein Structures. PLoS Comput Biol 5(3): e1000331. doi:10.1371/journal.pcbi.1000331

functionink

Community detection method for multidimensional networks

gplots

:exclamation: This is a read-only mirror of the CRAN R package repository. gplots — Various R Programming Tools for Plotting Data

invasion

Scripts to compute SEM for invasion experiments in natural microbial communities

maths4biology

Notes and scripts for the course Maths 4 Biology at Imperial College London

microbiome_helper

A repository of bioinformatic scripts, SOPs, and tutorials for analyzing microbiome data.

nmgs

Neutral model

ratiodependent

Fortran integration of ratio-dependent population dynamic models

replayecology

This repository contains scripts and data to reproduce results of the article Replaying the tape of ecology to domesticate wild microbiota

snake-puzzle

Code to solve and analise "snake" puzzles

spieceasi

Sparse InversE Covariance estimation for Ecological Association and Statistical Inference

structural_stability_prediction

code to compute the critical perturbation on the growth rates that a Lotka-Volterra mutualistic system can afford, as described in Pascual-Garcia & Bastolla Nat Comm 2017

treeholes_descriptive