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antspy

Advanced Normalization Tools in Python

bagls

A neural network trained on the BAGLS benchmark dataset

bagls_roi

Rectangular ROI selection for the BAGLS dataset

codingalongevening

This is everything we do in the Codig Along Evening sessions.

drawing3d

Functions to draw features in a 3D stack

dsss

Data Science Survival Skills examples

edgetpu

Deep Learning on Edge TPUs

flammkuchen

Flexible HDF5 saving/loading library forked from deepdish (University of Chicago) and maintained by the Portugues lab

genericgui

A generic graphical user interface (GUI) in Python, based on PyQt, numpy and pyqtgraph

glottalmidline

imagesareexcelsheets

This repository contains a Jupyter notebook that converts a given image to an Excel file.

lazyparallel

A class to easily run a function in parallel with runtime estimation

lif_reader

Reads LIF files (Leica Imaging File Format) and converts it to an hdf5 container file.

lossless

Saves videos or stacks lossless using different methods

moviemaker

Creates movies using FFMPEG from Matplotlib plots or custom images

nutil

Lazy functions for Jupyter notebooks

openhsv

OpenHSV - Endoscopy and Analysis Software

pac

This is a test repository for `pac`

pipra

Pixel-Precise Annotator

piprapaper

roifile

Read and write ImageJ ROI format. Forked from https://pypi.org/project/roifile

scikit-image

Image processing in Python

seaborn

Statistical data visualization using matplotlib

segmentation_models

Segmentation models with pretrained backbones. Keras.

survival2019

Python Survival Skill Course 2019

survival2022

This is where the stuff goes today

survival_2020

Everything I will do today I will provide here in this repository

survival_2021

This is the repository where I put everything I program today

zebrafish_nn

Testing neural networks to find features in larval zebrafish, such as the head, the tail tip and the tail base.