Angela Serra's Projects
Shiny tips & tricks for improving your apps and solving common problems
Python code to search clique in a labeled network. It search for clique of size 3 or 4 where each node in the clique has a different label.
A modified version of the Kohonen package implemented in R. In this version the similarities between objects can be evaluated also with the Pearson correlation
FunMappOne: a tool to summarize and visually navigate functional categories in multiple experiments.
Multi view clustering for patient sub-typing based on hierarchical block matrix
R implementation of the tool InsideNano with shiny library
MaNGA is a multi-niche/multi-objective genetic algorithm for QSAR modelling, that simultaneously enables stable feature selection as well as obtaining robust and validated regression models with maximized applicability domain.,
MVDA: A multi-view genomic data integration methodology
Multi-view clustering methodology in which the information from different data layers (views) is integrated at the levels of the results of each single view clustering iterations.
R script that identifies outliers in affymetrix samples
Multi-core R functions to build mututal information and correlation matrix
This is the R implementation of a robust correlation matrix estimator usefull in case of high-dimensional data to remove the bias. It also implement an adaptive thresholding technique based on cross validation tecnique to regularize the correlation matrix.
TinderMIX: Time-Dose INtegrated moDelling of toxicogenomics data
weighted kendall tau