andrewgyork Goto Github PK

adaptive_interference_inference

A mathematical optimization problem, inspired by an apparent paradox in the physics of optical measurement. Read the micro-publication here: https://andrewgyork.github.io/adaptive_interference_inference

annotation_buddy

cpython

The Python programming language

gfp_magnetofluorescence

high_na_single_objective_lightsheet

Parts list and build instructions for our high-numerical-aperture lightsheet. Read the publication here: https://andrewgyork.github.io/high_na_single_objective_lightsheet

iterative-fusion

Automatically exported from code.google.com/p/iterative-fusion

moire-sim-demo

Some brief blurbs about a structured illumination microscopy demo

mscarlet_lifetime_reports_ph

A scientific publication describing the use of mScarlet fluorescence lifetime to quantify lysosomal pH.

msim

Automatically exported from code.google.com/p/msim

palm3d

Automatically exported from code.google.com/p/palm3d

picoquant_spike_question

ps_decomp

Periodic plus smooth image decomposition, as described by Moisan (http://www.math-info.univ-paris5.fr/~moisan/papers/2009-11r.pdf)

publication_template

A template for writing scientific papers. View it in action here: https://andrewgyork.github.io/publication_template/

publication_template_data

See https://andrewgyork.github.io/publication_template/ for details

relaxation_sensors

A scientific publication that describes a new approach for quantitative readout of fluorescent biosensors, based on spontaneous isomerization rates. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/relaxation_sensors

remote_refocus

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/remote_refocus/

remote_refocus_data

See https://andrewgyork.github.io/remote_refocus/ for details

rescan_line_sted

A scientific publication, describing a way to improve microscopy. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/rescan_line_sted

rescan_line_sted_data

See https://andrewgyork.github.io/rescan_line_sted/ for details

simple_sim_fusion_demo

Simple demo of structured illumination microscopy image fusion via Richardson-Lucy deconvolution

snoutscope

split_wrmscarlet

A scientific publication that describes a new red fluorophore, along with a set of strains, reagents and protocols, to make it faster and easier to label endogenous C. elegans proteins with fluorescent tags. Read the publication here: https://andrewgyork.github.io/split_wrmscarlet

stimulated_emission_imaging

A scientific publication that describes experiments to explore whether stimulated emission from a pointlike emitter is distinguishable from the stimulating beam. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/stimulated_emission_imaging

tools

Things we use regularly

tumbling_is_general

A scientific publication that describes new approaches to measuring protein-protein interactions via molecular tumbling. This repository hosts everything you need to reproduce our results. Read the publication here: https://andrewgyork.github.io/tumbling_is_general/

tutorials

tutorials for the napari image viewer