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Name: Alessandro Varani
Type: User
Name: Alessandro Varani
Type: User
Bioinformatics code libraries and scripts
Batch SOM for Nucleotides
Gene cluster comparison figure generator
OS-agnostic, system-level binary package manager and ecosystem
Domain based annotation of transposable elements
A pipeline used to identify different modes of duplicated gene pairs
source code for EVM
FunGAP: fungal Genome Annotation Pipeline
R-package for an Ultra-Fast and Comprehensive Gene Annotation in Plants
A pipeline for scaffolding a genome assembly using Hi-C
A collection of tools for Hi-C data analysis
Hifiasm: a haplotype-resolved assembler for accurate Hifi reads
scripts to parse IrysView output
Python library to facilitate genome assembly, annotation, and comparative genomics
A Circos-based tool to visualize genome assembly consistency
Create real-time plots in Jupyter Notebooks.
A user-friendly online tool for drawing genetic maps
Mobile Genetic Elements Coordinates Extractor
MUM&Co is a simple bash script that uses Whole Genome Alignment information provided by MUMmer (only v4) to detect Structural Variation
Scripts to download genomes from the NCBI FTP servers
PASA software
NCBI Prokaryotic Genome Annotation Pipeline
Plant Genome Annotation Methods and Recipes - Structural Gene Annotation
Methods and recipes for Plant Genome Annotation - Transposable Elements
:zap: :aquarius: Rapid prokaryotic genome annotation
Create a pseudohaploid assembly from a partially resolved diploid assembly
The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
an R/shiny application for creation of Circos plot interactively
Web application for enormous biological heatmaps
Inference of ploidy and heterozygosity structure using whole genome sequencing data
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.