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ai_in_ag_conference_workshop_4_15_2024

2024 AI in Agriculture and Natural Resources Conference April 15, 2024 - April 17, 2024

aima-pseudocode

Pseudocode descriptions of the algorithms from Russell And Norvig's "Artificial Intelligence - A Modern Approach"

apg

Accelerated proximal gradient in R

bayes_days

R & Stan code associated with my "Bayes Days" workshop

bayesian_cbiomes

notebooks and files for the Bayesian CBIOMES workshop

bayesianmodelselection

cnn-from-scratch

A Convolutional Neural Network implemented from scratch (using only numpy) in Python.

coco

Conditional Causal Optimization (CoCo)

cv

d2l-en

Interactive deep learning book with multi-framework code, math, and discussions. Adopted at 175 universities.

disbatch

Driver script (python) to distribute a batch of tasks over a collection of compute nodes.

global-rrna-univeral-metabarcoding-of-plankton

A central repository for the GRUMP (Global rRNA Universal Metabarcoding of Plankton) dataset, containing scripts for bioinformatic processing and retrieval of associated physical / geochemical measurements from publicly available data.

go

The Open Source Data Science Masters

gofar

greek-symbols

Greek symbols plugin for IntelliJ IDEA

gru-rnn

Minimal numpy implementation of a RNN using GRUs

igiscdata

iGIScData for research and teaching

integrativeprojectwt2015

Transcriptome analysis of hippocampal subfields identifies gene expression profiles associated with long-term active place avoidance memory

ir18

Inference and Representation (DS-GA-1005, CSCI-GA.2569), fall 18

lectures

This repository contains slides from some of the classes I have taught in my career. The repository will be updated from time to time. If you are interested in the .tex files and other material (e.g., lab material) for your own course preparation, feel free to reach out directly to me.

llm-course

Course to get into Large Language Models (LLMs) with roadmaps and Colab notebooks.

lol

learning the Language of Life

mathsdl-spring18

Topics course Mathematics of Deep Learning, NYU, Spring 18

mathsdl-spring19

Mathematics of Deep Learning, Courant Insititute, Spring 19

microbiome-metabolome-curated-data

microbiome_16s_mbio

microbiome_pdb_pipeline

Computational workflows for analyzing 16S and metagenomics data

ml_from_scratch

Implementation of basic ML algorithms from scratch in python...

multiomic-cooccurrences

multitable_review

Code to accompany "Multitable Methods for Microbiome Data Integration"