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Name: Amanda Birmingham
Type: User
Company: University of California
Location: San Diego
Name: Amanda Birmingham
Type: User
Company: University of California
Location: San Diego
An extension to the C-VIEW (COVID-19 VIral Epidemiology Workflow) pipeline that uses Freyja to identify variants and lineages prevalent in mixed-input samples like wastewater.
Jupyter notebooks to assist with sample processing
Knight Lab internal Metagenomic processing scripts for demultiplexing, QC and host removal
Official repository for the QIIME 2 framework.
Tools to validate InspectSeq metadata files for use in C-VIEW
lab manager for plate maps and sequence flows
This repository contains code for the dual-CRISPR screen analysis pipeline developed to analyze results from the dual-CRISPR screening system set up by the labs of Dr. Prashant Mali and Dr. Trey Ideker. The software is developed by Amanda Birmingham and Roman Sasik of the Center for Computational Biology and Bioinformatics at the University of Cal
Multi-Omics Processing Pipeline (MOPP)
Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022
QIIME 2 plugin for pysyndna functionality
Prototype interface for automatically generating CWL tools from QIIME 2 actions
Generate Galaxy tool descriptions automatically from QIIME 2 actions.
Snakemake workflow for comparison of differential abundance ranks
Web application to collect metadata specifications from an experimenter and produce metadata input files with appropriate constraints
Qiita - A multi-omics databasing effort
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.