Coder Social home page Coder Social logo

πŒ€li ℍashmi, β„™h.𝔻.

I have a PhD in biophysics. I am primarily interested in the mathematical/computational and experimental approaches for exploring the physical basis of biological development. I am broadly interested in scientific programming, symbolic computing, image processing/computer vision and machine learning!

Following are the examples of some codes/scripts I have developed:

❂ 3D Vertex Model: A Mathematica code for simulating biological tissues in 3D ❂ 2D Vertex Model: Simulate biological tissues in 2D ❂ Force Inference: Infer forces from an epithelial tissue ❂ Nematic Defect: compute nematic defects from phase contrast images of tissues ❂ UNET segmentation: The first UNET implementation in Mathematica/Wolfram Language ❂ Elliptic Fourier Descriptor: Elliptic Fourier Descriptors for describing shapes ❂ CurvatureMeasure: Determine curvature of objects ❂ SMtrack and Lineage-Mapper: Track single molecules and cells respectively

Ali Hashmi's Projects

artistoo icon artistoo

CPM implementation in pure javascript (Node module)

bioformatslink icon bioformatslink

Package for interacting with Bio-Formats library in the Wolfram Language

femaddons icon femaddons

Finite Element Method addons for Wolfram Language

force-inference icon force-inference

implementation of the Bayesian Force Inference technique based on the work of Ishihara and Sugimura

lineage-mapper icon lineage-mapper

an overlap based cell-tracker based on Chalfoun et al, Nat. Sci. Rep. 2016

mask-segmentor icon mask-segmentor

segmentation for drosophila epithelia from noisy images (done for a colleague)

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    πŸ–– Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. πŸ“ŠπŸ“ˆπŸŽ‰

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❀️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.