aleksobrad Goto Github PK

aleksobrad.github.io

(Pre-release) An easy-to-use, flexible website template for labs, with automatic citations, GitHub tag imports, pre-built components, and more

awish

fu-j-et-al.-lgvhr-manuscript

humanized-mouse-data

Includes lists of shared clones and unshared clones, cross-reactives and allo-non-cross-reactives, t1d clones, and raw single-cell sequencing files. Also includes full TCR-Sequencing .tsv output from Adaptive ImmunoSeq.

pisces

R package for Protein activity analysis of single-cell RNAseq.

single-cell-rcc-pipeline

Data files and code for analysis of single-cell ccRCC data for the manuscript "Tumor-Specific Cell Populations in Clear Cell Renal Carcinoma Associated with Clinical Outcome Identified Using Single-Cell Protein Activity Inference." Includes code for VIPER protein activity inference pipeline

tcr-analysis

Code used for analysis of tabular CDR3 T-Cell Receptor Sequencing Data. Includes functions for Jensen-Shannon Divergence, Clonality, CD4/CD8 sort disambiguation, and alloreactivity determination from matched unstimulated and stimulated samples, with adjustable sensitivity thresholds.

vectr

wcdt

WGS Analysis for Quigley et al. 2018