Name: Alejandro Rojas
Type: User
Company: Michigan State University
Bio: Ecology and evolution of soilborne fungi and oomycetes, plant-microbe and microbe-microbe interactions in agriculture.
Location: East Lansing, MI
Blog: http://alejorojas2.github.io
Alejandro Rojas's Projects
tutorials for 2015 EDAMAME
Personal website
Various scripts for a data analysis
Various scripts for a data analysis
Analyses for rotation study
Bioinformatics training resources
Class exercise repository
Common scripts
Evaluation of robustness of common microbiome taxonomic classifiers. Here we present a set of tools and softwares to perform a systematic comparison of commonly used fungal ITS classifiers and databases with the aim to improve taxonomic classification of environmental sequence reads.
Data analyses for diversity of oomycetes associated with Corn in Michigan
Chilvers Lab Lunch and Learn
Here is a repo for workflows and notes for Network analyses of microbial data
A template for notes written in markdown and rendered to html, pdf, and docx with pandoc
Introduction to Bioinformatic skills
Testing different scripts in class
Data analysis and figures for Rojas at al. 2016 submitted to Phytopathology
Research project initialization and organization following reproducible research guidelines
An interactive web application for demonstrating and using phyloseq.
General lab tutorials and discussions