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ansible-role-kirgenotyping

Bioinformatics software including mamba, snakemake, samtools, minimap and jellyfish for Ubuntu systems.

ansible-role-pangenomics

ansible-role-pangenotyping

Different roles in ansible to install in VMs (cloud)

catch22

catch22: CAnonical Time-series CHaracteristics

certifications

circlecinodeapp

codingforentrepreuneurs

diveintokubernetes

Dive Into Kubernetes - Getting Started with Containers, Docker and Kubernetes

docker-ci-automation

GitHub Actions automation examples with Docker's official actions

eicu-code

Code and website related to the eICU Collaborative Research Database

flask-change-microservice

Small Flask Microservice that makes the change

flask-elastic-beanstalk

Project: Continuous Delivery with AWS Elastic Beanstalk

genotyping-pipelines

hello-world

it's just a proof in order to learn how to create a new repository

intro2simplevm

Workshop repository for an introduction to SimpleVM (cloud computing resources within de.NBI - German Network for Bioinformatics Infrastructure)

kirgenotyping

Project for inferring KIR genotyping from WGS using ML techniques

kubernetes-course

Official documentation and hands-on examples for the kubernetes training course

python-redis-docker

snakemake-tutorial

snakemake_tutorial

A short tutorial on getting started with Snakemake for workflow management

tips-tricks-tools

Several scripts, tips and tricks I came up with for the different tools I've been using

tsfresh

Automatic extraction of relevant features from time series:

udemy-docker-mastery

Docker Mastery Udemy course to build, compose, deploy, and manage containers from local development to high-availability in the cloud