installation non zero exit status about inspectdf

[alastairrushworth]

Hi @stevecrawshaw

Could you paste the full result of devtools::install_github('alastairrushworth/inspectdf')?

At a glance, the issue looks similar to this one but need more info to check.

Thanks!

[stevecrawshaw]

√ checking for file 'C:\Users\brplsec\AppData\Local\Temp\RtmpE9RJv3\remotes27e853066131\alastairrushworth-inspectdf-6132c28/DESCRIPTION' ...

• preparing 'inspectdf': (547ms)
  √ checking DESCRIPTION meta-information ...
• cleaning src
  Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
• checking for LF line-endings in source and make files and shell scripts
• checking for empty or unneeded directories
• building 'inspectdf_0.0.2.9000.tar.gz'

• installing source package 'inspectdf' ...
  Warning in as.POSIXlt.POSIXct(x, tz) : unknown timezone 'GMT'
  ** libs
  Warning: R include directory is empty -- perhaps need to install R-devel.rpm or similar
  C:/RBuildTools/3.5/mingw_32/bin/g++ -I"C:/PROGRA1/R/R-351.1/include" -DNDEBUG -I"C:/Program Files/R/R-3.5.1/library/Rcpp/include" -O2 -Wall -mtune=generic -c RcppExports.cpp -o RcppExports.o
  In file included from C:/Program Files/R/R-3.5.1/library/Rcpp/include/RcppCommon.h:29:0,
  from C:/Program Files/R/R-3.5.1/library/Rcpp/include/Rcpp.h:27,
  from RcppExports.cpp:4:
  C:/Program Files/R/R-3.5.1/library/Rcpp/include/Rcpp/r/headers.h:63:15: fatal error: R.h: No such file or directory
  #include <R.h>
  ^
  compilation terminated.
  make: *** [C:/PROGRA1/R/R-351.1/etc/i386/Makeconf:215: RcppExports.o] Error 1
  ERROR: compilation failed for package 'inspectdf'
• removing 'C:/Program Files/R/R-3.5.1/library/inspectdf'
  In R CMD INSTALL
  Error in i.p(...) :
  (converted from warning) installation of package ‘C:/Users/brplsec/AppData/Local/Temp/RtmpE9RJv3/file27e87f6b4b08/inspectdf_0.0.2.9000.tar.gz’ had non-zero exit status
  In addition: Warning messages:
  1: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers
  2: In untar2(tarfile, files, list, exdir) :
  skipping pax global extended headers

[alastairrushworth]

The key issue seems to be C:/Program Files/R/R-3.5.1/library/Rcpp/include/Rcpp/r/headers.h:63:15: fatal error: R.h: No such file or directory - the header files seem to be missing. This is something to do with your R install rather than inspectdf itself. You could try reinstalling Rcpp and see if that helps.

[stevecrawshaw]

Thanks for the response. I have tried reinstalling Rcpp to no avail. Unfortunately my ability to control the installation of R is limited by corporate policies, so for now I think I will have to do without inspectdf.

[alastairrushworth]

Yeah, sorry I couldn't be much help - I'm not sure I'd be able to advise what to try even if you could make changes to the install. It could be worth putting a question up on SO - I noticed a few like this, though nothing identical.