Comments (1)
Good morning.
Currently, fqtools can not be build without htslib, as it is required for reading SAM/BAM format. This functionality was requested by the paper reviewers. I believe that it would be relatively "easy" to allow building without the dependency and simply not allow reading FASTQ format directly from BAM/SAM. I'll look into it, but I'm really busy at the moment and can't promise a timescale.
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Related Issues (18)
- Any support for fq fix?
- htslib failed to install but this fixed it HOT 1
- add a new feature 'split fq' HOT 1
- `fqtools type` incorrectly typing fastq HOT 5
- PSA - fqtools is available to install via bioconda
- Lowercase option not working HOT 1
- Does not build per instructions, missing sam.h file. HOT 3
- Missing man page
- What does the validate subcommand check HOT 1
- find fastq reads from specific sequences HOT 2
- Add flag to fqtools validate to output sequence count HOT 2
- Tag a release HOT 1
- Compiler warnings HOT 2
- make test error
- an empty sequence line still passes HOT 1
- Any binary available? HOT 3
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