Alan Sebastián García's Projects
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes
ADAM is a genomics analysis platform with specialized file formats built using Apache Avro, Apache Spark, and Apache Parquet. Apache 2 licensed.
Config files for my GitHub profile.
The Alexa Skills Kit SDK for Python helps you get a skill up and running quickly, letting you focus on skill logic instead of boilerplate code.
Applied Computational Genomics Course at UU: Spring 2020
Applied Machine Learning for Healthcare and Life Sciences using AWS, published by Packt
Artemis is a free genome viewer and annotation tool that allows visualization of sequence features and the results of analyses within the context of the sequence, and its six-frame translation
A program to automatically process qPCR data from csv files in any PCR machine. To create a normalized table of RNA/DNA quantities, statistics and bar charts.
A machine learning approach of automatic identification and counting of all types of blood cells: RBCs, WBCs, and Platelets with K-nearest neighbor (KNN) and intersection over union (IOU) based verification.
A curated list of awesome open source libraries to deploy, monitor, version and scale your machine learning
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Genomics Workflows on AWS
BCCD (Blood Cell Count and Detection) Dataset is a small-scale dataset for blood cells detection.
This repository will assist you in creating a more beautiful and appealing github profile, and you will have access to a comprehensive range of tools and tutorials for beautifying your github profile. 🪄 ⭐
🔬 Bioinformatics Notebook. Scripts for bioinformatics pipelines, with quick start guides for programs and video demonstrations.
Docker container for bioinformatics tools and pipelines
Official git repository for Biopython (originally converted from CVS)
BiOinfOrmatics ThreAded Benchmark tooLsuitE (BOOTABLE)
A Python library to extract tabular data from PDFs
A repository of 60 useful data science prompts for ChatGPT
Toolset for the reproducible analysis of chromatography data (e.g. HPLC-DAD/UV, GC-FID) in R.
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
Bioinformatics containers
Programming assignments and quizzes from all courses within the Machine Learning Engineering for Production (MLOps) specialization offered by deeplearning.ai