akshayparopkari Goto Github PK

2020-08-17-ucmerced

Carpentry workshop for GROW

2020-12-07-txstate-online

DC Carpentry workshop organized by Texas Digital Libraries (archived)

akshayparopkari

My GitHub profile

akshayparopkari.github.io

My personal webpage

biasaway

BiasAway will improve TFBS enrichment analyses and the applied analysis of ChIP-Seq data, particularly for the annotation of reliable TFBSs within ChIP-Seq peaks.

cut_run_analysis

An analysis workflow for analyzing transcription factor-DNA binding data from CUT&RUN experiments.

discover_tfbs

Discover transcription factor (TF) binding specificities/sites (TFBS) using binding site motif sequence and structural information.

elcapitan-ansible

kadambari

A collection of scripts.

merced-cluster

Wiki and example on how to use the Merced Cluster.

misc_bioinformatics

Stores scripts I commonly use during bioinformatic analysis so I don't have to dig through old code

phycorder

pipeline to place taxa in a phylogeny using NGS reads

phylotoast

Tools for phylogenetic data analysis including visualization and cluster-computing support.

phylotoast-docs

Project documentation for QIIME-tools

planets

Learning Git and GitHub workflow

practice_scripts

Repo of practice scripts that may or may not be useful for various bioinformatic purposes

python-ecology-lesson

:page_with_curl: Data Carpentry Python lessons on ecology.

remote-jobs

A list of semi to fully remote-friendly companies in tech.

rnaseq

Preprocessing and differential expression analysis for QuantSeq 3' mRNA-seq data

scikit-learn

scikit-learn: machine learning in Python

shell-genomics

Covers the following bash commands cat, chmod, cd, cp, curl, head, history, ls, less, man, mkdir, mv, nano, pwd, rm, tail, wc, wget

three_circle_venn_diagram

Solving a three circle venn diagram word problem using pandas and matplotlib Python libraries

yfinance

Download market data from Yahoo! Finance's API