agladstein Goto Github PK

2013-khmer-counting

Paper code: "These are not the k-mers you are looking for: efficient online k-mer counting using a probabilistic data structure"

abc_results_aj

ABC results for "Substructured population growth in the Ashkenazi Jews inferred with Approximate Bayesian Computation"

academic-kickstart

Easily create a beautiful website using Academic and Hugo

aj_abc

Code for genomic simulations and Approximate Bayesian Computation for Gladstein and Hammer (2019) https://doi.org/10.1093/molbev/msz047

container_camp_workshop_2018

cv_repo

Ariella Gladstein's CV

dask-dataframe-benchmarking

A Jupyter Notebook I made to try out dask's Dataframes

diamond_blast_test

ecol-346-hpc-demo

Excercise for ECOL-346 Bioinformatics class

genomatnn

Predicts adaptive introgression using a CNN trained on genotype matrices.

germline

Linear time detection of Identity by Descent

jetstream-xsede-illo

illo with Jetstream/XSEDE cloud computing platform to practice for dibsi and training

manuscript

PopSim consortium manuscript

moal

MOdeling goALs: A bayesian approach to timely goal completion

msprime

A reimplementation of Hudson's classical ms simulator for modern data sets.

osgvo-docker-pilot

A Docker container build emulating a worker node for the OSG VO, using token authentication.

pop_gen_cnn

random_plotting

rna-seq-in-the-cloud

simprily

SimPrily: A Python framework to simplify high-throughput genomic simulations. https://doi.org/10.1016/j.softx.2018.09.003

simprily_update

smbe-sge-2019

Material for SMBE-SGE-2019 workshop

starter-academic

stdpopsim

A library of standard simulation models for msprime

workshops

A collection of workshop material