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Adriane Feijó Evangelista's Projects

biopython icon biopython

Official git repository for Biopython (originally converted from CVS)

dcc-repository icon dcc-repository

Importer for the ICGC "Data Repository" feature which imports file metadata from various external data repositories.

rnaseq icon rnaseq

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

sbcas-2020 icon sbcas-2020

Code used for the paper presented at SBCAS-2020

seqware-bwa-workflow icon seqware-bwa-workflow

This is the BWA workflow used in the PanCancer project used to allign all the BAM files.

sigprofilerextractor icon sigprofilerextractor

SigProfilerExtractor allows de novo extraction of mutational signatures from data generated in a matrix format. The tool identifies the number of operative mutational signatures, their activities in each sample, and the probability for each signature to cause a specific mutation type in a cancer sample. The tool makes use of SigProfilerMatrixGenerator and SigProfilerPlotting.

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