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aas-extended-examples

A collection of notebooks used in the tutorials for the applied analytic statistics course in 2020

aezarebski

This content appears on my GitHub profile.

aezarebski.github.io

backgammon-clock

A Fischer style clock for backgammon

beast2-site

beast2 web development site

beasts-castle

This repository contains some helpful scripts for working with BEAST2.

bibread

biology-github-tutorial

Question https://github.com/aezarebski/github-tutorial/tree/q4-tweak#question-4

cban

releases of beast2 packaged zip files in a reliable location

competitive-mixtures

conflict-resolution-example

Question 4 of https://github.com/aezarebski/github-tutorial

copilot.el

An unofficial Copilot plugin for Emacs.

covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

covid-19-testing-data

Data set of testing data from the COVID19 pandemic.

covid19db-figshare

either

the EitherT monad transformer

epi-sim

A library for simulating epidemics, with a focus on phylodynamics and observation models.

examples

Examples on the use of covid19db database

git-usage

github-tutorial

A tutorial on the use of git, and GitHub for open and reproducible science. See the live version of this here: https://aezarebski.github.io/misc/github-tutorial/README.html

maxima-layer

Spacemacs layer that configures maxima.el

mighty-metropolis

The classic Metropolis sampling algorithm.

milligram

A minimalist CSS framework.

mvp-notes-and-ideas

Repository for the output of initial discussions regarding an MVP

ncov2019

Location for summaries and analysis of data related to n-CoV 2019, first reported in Wuhan, China

nicemacs

configuration for spacemacs

oxcovid19

An R API to the Oxford COVID-19 Database

phylodynamic-covasim

An example of how to use covasim for simulations which can be analysed with phylodynamic methods

remaster

High-fidelity stochastic tree simulation for BEAST 2.

spacemacs

A community-driven Emacs distribution - The best editor is neither Emacs nor Vim, it's Emacs *and* Vim!