aertslab Goto Github PK
Name: aertslab
Type: Organization
Twitter: steinaerts
Location: Leuven, Belgium
Blog: https://aertslab.org
Name: aertslab
Type: Organization
Twitter: steinaerts
Location: Leuven, Belgium
Blog: https://aertslab.org
A scalable python-based framework for gene regulatory network inference using tree-based ensemble regressors.
Allele specific variant pipeline
Some scripts for ATAC-seq data analysis
AUCell: score single cells with gene regulatory networks
This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib
Official git repository for Biopython (converted from CVS)
Code for reproducing the figures presented in the manuscript 'Identification of genomic enhancers through spatial integration of single-cell transcriptomics and epigenomics' (Bravo et al., 2020)
Bravo_et_al_Liver
cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
Create cisTarget databases
Core functions for pycisTarget and the SCENIC tool suite
DeepBrain: a collection of vertebrate sequence-based enhancer models aimed at understanding brain cell type enhancer code across and within species
Create BCF/VCF files with all DGRP2 mutations for Drosophila melanogaster (dm6) from dm3 VCF files.
Decoding gene regulation in the fly brain
GENIE3 (GEne Network Inference with Ensemble of trees) R-package
Scalable inference of gene regulatory networks using Apache Spark and XGBoost
Call GRPC services (even streams!) from the browser over any two-way socket to Node and soon Go.
Connect to any GRPC service from a browser via a WebSocket Proxy Server
C library for high-throughput sequencing data formats
motif finding library and application that can be used to search for potential transcription factors.
Install latest version of Aspera Connect and show example how to use it for downloading sequening data.
A regulon consists of a transcription factor (TF) and its direct transcriptional targets, which contain common TF binding sites in their cis-regulatory control elements. The iRegulon plugin allows you to identify regulons using motif and track discovery in an existing network or in a set of co-regulated genes.
Iterative peak filtering.
Python implementation of the Loom file format - http://loompy.org
Python package (compatible with SCope) to create .loom files and extend them with other data e.g.: SCENIC regulons
MACS -- Model-based Analysis of ChIP-Seq
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.