Resources for cross-DB conversion of functional terms: KO number, GO (Gene Ontology) term, EC (Enzyme Commission) number, and MetaCyc reaction/pathways ID.

genome-assembly-algorithms

Algorithmic implementations for Honor Track of Genome Sequencing (https://www.coursera.org/learn/genome-sequencing/home/welcome)

gssr

A Computing Data Science Perspective on Gene Splice Site Identification.

jensenshannon-mst

Microbial source track using Jensen-Shannon Divergence.

learning-jug

Learning parallelization using Jug.

linux-manual-for-bioinformaticians

Linux manual for bioinformaticians, still updating.

living-tree-toolkit

Taxonomical abundance remapping and feature engineering for taxonomic profiles.

motif-finding-algorithms

Implementation of three algorithms to solve the motif finding problem.

mst-auger

Synthetic mixture-based data augmentation for microbial source tracking

papers-i-read

Papers I read.

pypi-template

A template repository for PYPI package, just for personal use.

quasarhandson

A simple hands-on application using Quasar UI framework.

remarkjs-slides-template

A remarkjs-based slides template: simple and elegant.

reproducible-research-template

A template repository for reproducible research using Jupyter notebook (recommended).

scripting-workbench-configuration

talk-top-down-programming

Top-down programming for problem solving.

unipcoa

Unifrac-based PCoA visualization of microbial community samples.

vue.js

This is an archived repository. The development has been transferred to https://github.com/BigDataBiology/AMPSphereWebsite.

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