adamnovak Goto Github PK

adamnovak.github.io

Personal Work Startpage

advancementpresentation

My presentation for my advancement. We will see if I pass.

aligner-tester

A Docker container that can test an aligner for the GA4GH graph bake-off

amazon-genomics-cli

autovax

Design SARS-CoV-2 vaccine candidates from the comfort of your home!

aws-cdk

The AWS Cloud Development Kit is a framework for defining cloud infrastructure in code

azure-quickstart-templates

Azure Quickstart Templates

backward-cpp

A beautiful stack trace pretty printer for C++

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

bh20-seq-resource

Tool to upload SARS-CoV-2 sequences and service to kick off analysis

bh20-simple-web-uploader

Now part of https://github.com/arvados/bh20-seq-resource ; available at http://covid-19.genenetwork.org/

biicode

biicode c/c++ dependency manager

biicode-setup

Pip-compatible setup script for biicode

binder

Binder, tool for automatic generation of Python bindings

biopython

Official git repository for Biopython (converted from CVS)

cactus

Official home of genome aligner based upon notion of Cactus graphs

cactus2hal

Convert progressive cactus database into a hal file

charliesandbox

A place where random projects live

client

Biicode client

coc.nvim

Nodejs extension host for vim & neovim, load extensions like VSCode and host language servers.

complete-striped-smith-waterman-library

corg

Tool to merge two vg graphs into a core graph

cwltest

Framework for testing CWL tools and workflows

dbgfm

FM-index representation of a de Bruijn graph

deph

Debugging example for triggering Ceph MDS deadlocks

dg

Dynamic succinct graphs

exp

command line interface to http://explainshell.com

fastahack

utilities for indexing and sequence extraction from FASTA files

flamegraph

Stack trace visualizer

funnel

Funnel is a toolkit for distributed task execution via a simple, standard API.