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ahm_nimble

Code from Applied Hierarchical Modeling in Ecology translated to NIMBLE (from JAGS/WinBUGS)

ahmnimble

Examples from Kéry & Royle's "Applied Hierarchical Modeling in Ecology (Volume I)" converted to NIMBLE

airupthere

Download, process, and use WorldClim, TerraClimate, and PRISM climate data

airupthere_updates

Latest versions of URLs for airUpThere

awesome-r-dataviz

Curated resources about Data Visualization, Drawing & Publishing in R

awesome-r-pkgtools

A curated list of awesome tools for R package development

badges

:pencil: Markdown code for lots of small badges :ribbon: :pushpin: (shields.io, forthebadge.com etc) :sunglasses:. Contributions are welcome! Please add yours!

bayes2speciesoccupancy

Simulate data and fit 2-species occupancy model à la Rota et al. (2016) w/ Jags and Nimble

birdseye

Tools for geographic analysis

cmip_warming_levels

year when a certain warming level was reached in cmip5 and cmip6 data

colormap

R package for 2d and 3d color legends

countyendangeredspecies

Bayesian implementation inspired in attribution models to disentangle the effect of anthropogenic factors (agriculture, road construction, etc) in the endangered status of rare plants across counties. Analogous to attribution models, conversion (whether a species is endangered or not) cannot be unambiguously attributed to a specific touching-point (county). If a species is endangered, this should be the case in at least one of the counties (but potentially more). The credit that each county receives (probability of a species to be endangered there) depends on the combination of all species, and the variation of distributions of the species make it possible to determine which counties have higher or lower credits towards endangerment on a specific factor.

dea-coastlines

Extracting tidally-constrained annual shorelines and robust rates of coastal change from freely available Earth observation data at continental scale

deleting_facebook

Documentation of what I'm doing to prepare to delete my Facebook account

delphiniumexaltatum

Modeling the historical biogeography of an endangered plant, Delphinium exaltatum

disdat

enms_impreciserecords

What is the cost of discarding imprecisely-located specimens when evaluating species' vulnerability of climate change?

enmsdm

Faster, better, smarter ecological niche modeling and species distribution modeling

enmsdmpredimport

Testing methods for measuring variable importance in species distribution models

enmsdmpredimport_scenarios

Creation of scenarios and analysis of results of testing methods for measuring variable importance using species distribution models

enmsdmx

Tools for Modeling Niches and Distributions of Species

fasterraster

Faster raster processing in R using GRASS GIS

fragmentation

Forest Fragmentation for Binary and Continuous Forest Cover Rasters

geospatial

geoviz

Functions to make it easy to add GPS traces to rstats Rayshader scenes, process DEM data and to overlay ggmap imagery

ggbiplot

A biplot based on ggplot2

ggplot2_workshop

Material for "Drawing Anything with ggplot2" workshop

gp_sdm_paper

analysis code for the paper "Fast and flexible Bayesian species distribution modelling using Gaussian processes"

holosimcell

linked forward/reverse time simulations for TIMBER project; this code is based on a cells rather than arbitrary locations

how_we_work

Lab best practices and policies to conduct open, reproducible, and inspiring science that is efficient and fun