Name: Alex Komissarov
Type: User
Company: aglabx
Bio: Skilled Python & C++ engineer w/ genomics, bioinformatics, NLP & ML expertise. In love w/ generative AI, chatGPT. Fullstack. Adaptable team player, lead, or PM
Location: Cyprus
Blog: https://scholar.google.com/citations?user=Dy6-WaAAAAAJ&hl=en
Alex Komissarov's Projects
Interactive visualization of assembly graphs
Perfect hash based Index for text data
Collection of receipts for animal genomics
A curated list of reads error correction tools, inspired by other awesome pages
B chromosome assembly and annotation from MiSeq reads
a Bioinformatics Application for Navigating De novo Assembly Graphs Easily
A simple flask app that can be extended in something more
Conda recipes for the bioconda channel.
Official git repository for Biopython (converted from CVS)
BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes
Official home of genome aligner based upon notion of Cactus graphs
Detection for chromosomal abnormalities at the megabase level
City walls data and parser
A Python tool that consolidates code from a repository into a unified format for AI-assisted analysis and manipulation.
Code snippets and examples
CoralSnake: search and annotation of major satellite DNA families
The Leek group guide to data sharing
Contaminations
Python library for optical map manipulation
EchoPapers: Discover and analyze the impact of academic papers through citation tracking and advanced analytics
A small library for scraping websites using proxy
Plotting Assignment 1 for Exploratory Data Analysis