acorbat Goto Github PK

acorbat.github.io

adjutant

A python based slack bot that interprets commands and runs code through chat.

anisotropy_errors

A small interactive package to test and study the effecto of different sources of noise and errors in anisotropy estimation.

apoptoside

Analysis for apoptotic cascade experiments.

barcode_library_characterizer

A small package for characterizing big (huge) libraries of barcodes.

barridolockin

Barrido en frecuancias utilizando generador interno del LockIn

base_paper

Clean paper to use as starting point.

bio-image_analysis_with_python

Lecture materials "Bio-image analysis, biostatistics, programming and machine learning for computational biology" at the Center of Molecular and Cellular Bioengineering (CMCB) / University of Technology, TU Dresden

caspase_model

Variations to EARM used in papers published from Grecco's Lab.

covers

dedup

a deduplication tool

earm

Extrinsic Apoptosis Reaction Model

embo-practical-course-2023

Advanced methods in bioimage analysis

foci_finder

Image analysis pipelines and functions used to segment and characterize different behaviours regarding foci.

folder_convention

An overview of possible way of organizing project folders.

frap-analysys

package used to open oif and tif images from FluoView1000 Confocal microscope and analyze FRAP experiments

frap_analysis

Package used to analyze frap experiments.

fret_transformation

package of functions designed to translate anisotropy signals from homoFRET sensors into the state of the sensor and then apply different models to obtain the state of a desired enzyme working on the sensor.

fw10

Planos para confeccionar una rueda de filtros mediante impresión 3D

gears

git_workshop

a small repository with a single file to practice git skills.

gnn_transformers_notebooks

Notebooks for the ENCCS Graph Neural Networks and Transformers workshop

gpu-programming

Meta-GPU lesson covering general aspects of GPU programming as well as specific frameworks

gulliver

An image analysis package for whole slide liver immunostainings

img_manager

Aimed to managing image files ordered in folders.

is_even

A function to check that a number is even.

is_odd

checks if number is odd

lantz

Lantz is an automation and instrumentation toolkit with a clean, well-designed and consistent interface. It provides a core of commonly used functionalities for building applications that communicate with scientific instruments allowing rapid application prototyping, development and testing. Lantz benefits from Python’s extensive library flexibility as a glue language to wrap existing drivers and DLLs.

lintrec

Small package containing useful tools to analyze and interpret lineage tracing experiments.

liver_lineage_test

Small model to analyze liver lineage tracing model from Ober paper.