OpenVDB does not compile with GCC 6.1.1 about openvdb

[phcerdan]

This is a duplicate of #144

In short:
Set CMake option to not use isystem for imported targets:

cmake ../src -DCMAKE_NO_SYSTEM_FROM_IMPORTED:BOOL=TRUE 

[malaterre]

The issue is given in details at: https://gcc.gnu.org/bugzilla/show_bug.cgi?id=70129

[malaterre]

Proper fix would be to avoid using '-isystem /usr/include' in the Makefiles

[aditiapratama]

hi @malaterre, have you succeed build it using gcc 6.1.1? any workaround? I don't know how to fix it by avoid using -isystem /usr/include

[aditiapratama]

Okay, avoiding use /usr/include did the trick for me but still fail when building vdb_print, etc. Here's the log

make lib install
make: Nothing to be done for 'lib'.
Building vdb_print because of libopenvdb.so.3.2.0 main.cc
g++ -std=c++0x -pthread -O3 -DNDEBUG -I . -I .. -isystem /usr/include/boost -isystem /opt/lib/openexr/include -isystem /usr/include/tbb -isystem /opt/lib/blosc/include -isystem /usr/include/log4cplus -DOPENVDB_USE_BLOSC -DOPENVDB_USE_LOG4CPLUS -DOPENVDB_USE_GLFW_3 -o vdb_print cmd/openvdb_print/main.cc -I . \
    -Wl,-rpath,/opt/lib/openvdb/lib -L/home/aditia/src/blender-deps/openvdb-master/openvdb libopenvdb.so.3.2.0 \
    -ldl -lm -lz -Wl,-rpath,/opt/lib/openexr/lib -L/opt/lib/openexr/lib -lHalf -Wl,-rpath,/usr/lib64 -L/usr/lib64 -ltbb -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lboost_iostreams -lboost_system  -Wl,-rpath,/opt/lib/blosc/lib -L/opt/lib/blosc/lib -lblosc -lz -Wl,-rpath,/usr/lib64 -L/usr/lib64 -llog4cplus -Wl,-rpath,/usr/lib64 -L/usr/lib64 -lrt -ljemalloc
/usr/bin/ld: vdb_print: hidden symbol `__cpu_model' in /usr/lib/gcc/x86_64-redhat-linux/6.1.1/libgcc.a(cpuinfo.o) is referenced by DSO
/usr/bin/ld: final link failed: Bad value
collect2: error: ld returned 1 exit status
Makefile:735: recipe for target 'vdb_print' failed
make: *** [vdb_print] Error 1

[malaterre]

Just for reference, the original post was using the Makefile based build system. I'll switch to cmake for Debian package. Thanks for help !