abdubidopsis Goto Github PK

abd-rstudio

RStudio is an integrated development environment (IDE) for R

academicpages.github.io

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ampril-genomes

scripts for the project of seven thaliana genomes assembly

aradeepopsis

A versatile, fully open-source pipeline to extract phenotypic measurements from plant images

awesome-genome-visualization

A list of interesting genome browser or genome-browser-like implementations

bandage

a Bioinformatics Application for Navigating De novo Assembly Graphs Easily

braker

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

braker-tsebra-workshop

This repository contains course materials for a workshop on structural genome annotation with BRAKER and TSEBRA

circle-map

A method for circular DNA detection based on probabilistic mapping of ultrashort reads

complexheatmap

Make Complex Heatmaps

csama

Course material for CSAMA: Statistical Data Analysis for Genome Scale Biology

deseq_rnaseq

enhancedvolcano

Publication-ready volcano plots with enhanced colouring and labeling

esquisse

RStudio add-in to make plots with ggplot2

gephi

Gephi - The Open Graph Viz Platform

ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees

gwas_gemma

Perform GWAS with gemma in a simple pipeline

helixer

Using Deep Learning to predict gene annotations

intermediate-python-training

lncrna-screen

lncRNA-screen

lncscore-java

Prediction of lncRNA from RNA-Seq data

medicago_rhizophagus_rnaseq

This is a repository for the publication "Spatially-Resolved, Single Cell Transcriptome Mapping of the Arbuscular Mycorrhizal Symbiosis" in which authors applied single-nuclei RNA-seq and spatial RNA-seq to the symbiosis between Medicago truncatula and Rhizophagus irregularis.

minichain

Long-read aligner to pangenome graphs

openmx

Repository for the OpenMx Structural Equation Modeling package

pan_ath

Code for Article "A pan-genome of 69 Arabidopsis thaliana accessions reveals a conserved genome structure throughout the global species range"

polotno-studio

Free online Design Editor.

rnaseq-nf

A proof of concept of RNAseq pipeline

sars2app

thinned out for tsapp only

shinycircos

an R/shiny application for creation of Circos plot interactively

spyder

Official repository for Spyder - The Scientific Python Development Environment