aaronmck Goto Github PK

aaronmck.github.io

handle redirects to previous links

add_umi

a simple Rust tool to parse out a UMI from a read name and add it as a SAM file tag

auto_dog_door

Automatic dog door code

badread

a long read simulator that can imitate many types of read problems

bioinformatics_workshop-dec-2022

capseg

CapSeg - Copy Number from Exome Sequencing

cas9fatemapping

Collection of code for the GESTALT fate mapping paper using the CRISPR/Cas9 system

complete-striped-smith-waterman-library

cv

My CV

edlib-rs

rust binding to edlib

fastq_downsampler

A simple FASTQ probabilistic downsampler written in Rust

maul

A single or dual barcode splitter for sequencing data

pepper

P.E.P.P.E.R.: Program for Evaluating Patterns in Pileups of Erroneous Reads

platetools

An R package for plotting 96 / 384 / 1536 well plates

quicklook

nuc lookup

rs-wfa

Rust bindings to the wavefront algorithm C implementation

rust-spoa

Rust crate with bindings and interface to the SPOA library for generating consensus sequences.

sanity

Filtering of Poison noise on a single-cell RNA-seq UMI count matrix

sc_gestalt

GESTALT processing pipeline for barcodes captured with single-cell RNA sequencing

suffix

Fast suffix arrays for Rust (with Unicode support).

vpsearch

Rust library for finding nearest (most similar) element in a set

youngalliance.github.io

Our web setup