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covasim

COVID-19 Agent-based Simulator (Covasim): a model for exploring coronavirus dynamics and interventions

covid-19

covid19-forecast-hub-evaluation

Evaluation of models from the COVID-19 Forecast Hub (https://github.com/reichlab/covid19-forecast-hub). These models are submitted weekly to the CDC to help inform public health decision-making.

covid19_inference

Bayesian python toolbox for inference and forecast of the spread of the Coronavirus

dashboard_r0_covid19

Dashboard on Shiny to calculate R0 for Covid19 in Colombia with different methods

data2019ncov

COVID-19 Pandemic Data R Package

expectedforce

graphnn

Training computational graph on top of structured data (string, graph, etc)

idm-cms

IDM compartmental modeling software (CMS)

infekta

First commit

information-dissemination-in-a-graph

Information Dissemination in a graph using NetMelt, NetGel and NetShield Algorithms

mathematics-of-epidemics-on-networks

Source code accompanying 'Mathematics of Epidemics on Networks' by Kiss, Miller, and Simon http://www.springer.com/us/book/9783319508047 . Documentation for the software package is at https://epidemicsonnetworks.readthedocs.io/en/latest/

nc_covid19_bavaria

networkit

NetworKit is a growing open-source toolkit for large-scale network analysis.

networkx

Network Analysis in Python

nowcasting_covid19

Now-casting Japan during the COVID-2019 Pandemic at the beginning of March 2020

ph_datasets

Persistent Homology Datasets

pooledprevalence

A set of tools to help design a laboratory based prevalence study harnessing the pooling of laboratory samples to increase resource efficiency.

rtcolombia

simulation-files-for-large-scale-model-for-information-dissemination-with-device-to-device

SIR model with Gillespie (Tau-leap) algorithm

slidingwindowvideotda

synthpops

Create synthetic populations for COVID-19 epidemic analyses.

yyg-seir-simulator

Underlying SEIR simulator for the YYG / covid19-projections.com model